CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
SomaticIndelDetector 0 38 weeks 15 hours ago
by erichpeterson
n/a
Errors on running ChainFinder 3 1 year 4 weeks ago
by apatch
39 weeks 1 day ago
by Annees
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 39 weeks 6 days ago
by davidwb7
n/a
TCGA protein change annotation 0 41 weeks 3 days ago
by mstewart
n/a
MutSigCV error "not enough mutations to analyze" 2 45 weeks 3 days ago
by slg
43 weeks 6 days ago
by slg
Where can I download Indelocator 0 43 weeks 6 days ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 44 weeks 4 days ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 46 weeks 3 days ago
by igor
n/a
Error in RNAseqc 1 47 weeks 2 hours ago
by saad khan
46 weeks 3 days ago
by ersgupta
maf -> oncotator format 0 47 weeks 11 hours ago
by mrooney
n/a
Questions on MutSig use 0 47 weeks 4 days ago
by fendou000
n/a
ABSOLUTE - maf format 0 48 weeks 6 days ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 48 weeks 6 days ago
by apatch
n/a
What columns are necessary in MAF for MutSigCV? 2 1 year 5 days ago
by MZimm
49 weeks 5 hours ago
by fcaramia
MutSigCV Error List / Coverage file generation process 2 1 year 4 days ago
by davidwb7
49 weeks 5 days ago
by ersgupta
RNA-SeqQC support 1 51 weeks 5 days ago
by lletourn
50 weeks 6 days ago
by csb
MutSig output features 1 1 year 5 days ago
by Imbeaud
51 weeks 3 days ago
by gsaksena
MutSig Preprocess error 0 51 weeks 6 days ago
by slg
n/a
Generate new maf file 4 1 year 3 weeks ago
by xunanfang
1 year 6 days ago
by xunanfang
Status of Mutsig 2 1 year 2 weeks ago
by ddarcy
1 year 1 week ago
by gsaksena
MCR installation error on linux 0 1 year 1 week ago
by Imbeaud
n/a
Error in RNA-seQC 0 1 year 2 weeks ago
by mdeloger
n/a
Running MutSig without a matlab licence 3 1 year 6 weeks ago
by cem45
1 year 3 weeks ago
by gsaksena
Allele frequency from maf files 1 1 year 10 weeks ago
by dave.wettmann
1 year 9 weeks ago
by gsaksena
questions on duplication rate by RNA-SEQC 1 1 year 20 weeks ago
by chunxuan
1 year 20 weeks ago
by ddeluca