CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
MutSig Invalid field error 4 1 year 10 weeks ago
by fcaramia
42 weeks 1 day ago
by msjustu40
MutSig- genes that lack coverage information 1 1 year 11 weeks ago
by Omer Zuqert
44 weeks 2 days ago
by biotechnepal
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 44 weeks 2 days ago
by biotechnepal
n/a
using ABSOLUTE for sequencing data 1 1 year 7 weeks ago
by yil8
44 weeks 6 days ago
by lletourn
Mutect - no variants found after chromosome 5 0 45 weeks 2 days ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 46 weeks 6 days ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 50 weeks 1 day ago
by Carla
n/a
mutSigCV input 1 1 year 1 week ago
by jxhu
50 weeks 1 day ago
by Carla
SomaticIndelDetector 0 51 weeks 2 days ago
by erichpeterson
n/a
Errors on running ChainFinder 3 1 year 17 weeks ago
by apatch
1 year 2 days ago
by Annees
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 1 year 1 week ago
by davidwb7
n/a
TCGA protein change annotation 0 1 year 2 weeks ago
by mstewart
n/a
MutSigCV error "not enough mutations to analyze" 2 1 year 6 weeks ago
by slg
1 year 5 weeks ago
by slg
Where can I download Indelocator 0 1 year 5 weeks ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 1 year 5 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 1 year 7 weeks ago
by igor
n/a
Error in RNAseqc 1 1 year 8 weeks ago
by saad khan
1 year 7 weeks ago
by ersgupta
maf -> oncotator format 0 1 year 8 weeks ago
by mrooney
n/a
Questions on MutSig use 0 1 year 8 weeks ago
by fendou000
n/a
ABSOLUTE - maf format 0 1 year 10 weeks ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 1 year 10 weeks ago
by apatch
n/a
What columns are necessary in MAF for MutSigCV? 2 1 year 14 weeks ago
by MZimm
1 year 10 weeks ago
by fcaramia
MutSigCV Error List / Coverage file generation process 2 1 year 13 weeks ago
by davidwb7
1 year 10 weeks ago
by ersgupta
RNA-SeqQC support 1 1 year 12 weeks ago
by lletourn
1 year 12 weeks ago
by csb
MutSig output features 1 1 year 14 weeks ago
by Imbeaud
1 year 12 weeks ago
by gsaksena