CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
Problems getting MutSig running 1 2 weeks 1 day ago
by david.hadley
2 weeks 1 day ago
by david.hadley
ContEst for sequencing data 0 7 weeks 4 days ago
by rebecca
n/a
ChainFinder pipeline 0 8 weeks 4 hours ago
by andreasottoriva
n/a
Running D-ToxoG without a Matlab license 0 10 weeks 1 day ago
by jchellmuth
n/a
MutSig error 3 46 weeks 5 days ago
by nunu_ping
13 weeks 5 days ago
by cwarden45
ABSOLUTE using Oncoscan copy number 0 14 weeks 5 days ago
by inodb
n/a
dRanger 0 15 weeks 1 day ago
by sih
n/a
D-ToxoG - where do I get reads pair orientation for the input files 0 19 weeks 6 days ago
by shai_rosenberg
n/a
ABSOLUTE not generating plots 1 37 weeks 4 days ago
by mbark0
24 weeks 5 days ago
by deepthi.rajagopalan
Undefined function or variable "method" when categ>1? 0 25 weeks 6 days ago
by ramirob
n/a
using ABSOLUTE for sequencing data 2 1 year 48 weeks ago
by yil8
26 weeks 21 hours ago
by feis@ohsu.edu
MutsigCV - custom region coverage 0 26 weeks 5 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 26 weeks 5 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 26 weeks 5 days ago
by JamesPlatt
n/a
MutSigFN and MutSigCL 1 1 year 20 weeks ago
by 李斌
27 weeks 5 days ago
by jacmarjorie
MutSig creation of coverage table 1 46 weeks 4 days ago
by ksymeonidh
31 weeks 23 hours ago
by Jiantao
ABSOLUTE warning 1 1 year 13 weeks ago
by arshia
35 weeks 7 min ago
by thrushcyc
ABSOLUTE data set 2 1 year 27 weeks ago
by thrushcyc
35 weeks 19 hours ago
by thrushcyc
Can mutect run on multiple tumor samples? 0 35 weeks 6 days ago
by wenluo
n/a
Creation of coverage file 0 36 weeks 4 days ago
by ramirob
n/a
categ_flag should be numeric error on example data 1 36 weeks 5 days ago
by ramirob
36 weeks 4 days ago
by ramirob
MutSig 1.5 0 39 weeks 6 hours ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 42 weeks 4 days ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 45 weeks 5 days ago
by shanbio
n/a
MutSigCV output 1 48 weeks 5 days ago
by adomingues
46 weeks 3 days ago
by Jiantao