CGA Tools Help Forum

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Problems getting MutSig running 1 1 week 2 days ago
by david.hadley
1 week 2 days ago
by david.hadley
ContEst for sequencing data 0 6 weeks 5 days ago
by rebecca
n/a
ChainFinder pipeline 0 7 weeks 1 day ago
by andreasottoriva
n/a
Running D-ToxoG without a Matlab license 0 9 weeks 2 days ago
by jchellmuth
n/a
MutSig error 3 46 weeks 8 hours ago
by nunu_ping
12 weeks 6 days ago
by cwarden45
ABSOLUTE using Oncoscan copy number 0 13 weeks 6 days ago
by inodb
n/a
dRanger 0 14 weeks 2 days ago
by sih
n/a
D-ToxoG - where do I get reads pair orientation for the input files 0 19 weeks 12 hours ago
by shai_rosenberg
n/a
ABSOLUTE not generating plots 1 36 weeks 6 days ago
by mbark0
23 weeks 6 days ago
by deepthi.rajagopalan
Undefined function or variable "method" when categ>1? 0 25 weeks 14 hours ago
by ramirob
n/a
using ABSOLUTE for sequencing data 2 1 year 47 weeks ago
by yil8
25 weeks 2 days ago
by feis@ohsu.edu
MutsigCV - custom region coverage 0 25 weeks 6 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 25 weeks 6 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 25 weeks 6 days ago
by JamesPlatt
n/a
MutSigFN and MutSigCL 1 1 year 19 weeks ago
by 李斌
27 weeks 4 hours ago
by jacmarjorie
MutSig creation of coverage table 1 45 weeks 5 days ago
by ksymeonidh
30 weeks 2 days ago
by Jiantao
ABSOLUTE warning 1 1 year 12 weeks ago
by arshia
34 weeks 1 day ago
by thrushcyc
ABSOLUTE data set 2 1 year 26 weeks ago
by thrushcyc
34 weeks 2 days ago
by thrushcyc
Can mutect run on multiple tumor samples? 0 35 weeks 12 hours ago
by wenluo
n/a
Creation of coverage file 0 35 weeks 5 days ago
by ramirob
n/a
categ_flag should be numeric error on example data 1 35 weeks 6 days ago
by ramirob
35 weeks 5 days ago
by ramirob
MutSig 1.5 0 38 weeks 1 day ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 41 weeks 5 days ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 44 weeks 6 days ago
by shanbio
n/a
MutSigCV output 1 47 weeks 6 days ago
by adomingues
45 weeks 5 days ago
by Jiantao