What is BreakPointer?
BreakPointer is a tool to pinpoint rearrangement breakpoints using paired end reads.
How does it work?
In brief, BreakPointer consists of five steps, shown in the sketch below:
How to Cite BreakPointer?
BreakPointer users may publish or otherwise publicly disclose the results of using BreakPointer. Please acknowledge BreakPointer in your publications by citing the following reference:
Drier Y, Lawrence MS, Carter SL, Stewart C, Gabriel SB, Lander ES, Meyerson M, Beroukhim R, Getz G. Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. Genome Research 2013, 23(2): 228-235.
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