Genes Categorized by Hmmer Family

Find all genes containing the specified PFAM domain.

Family Family Description Annotated Genes
2-Hacid_DH D-isomer specific 2-hydroxyacid dehydrogenases 2
2-Hacid_DH_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2
2_5_ligase 2',5' RNA ligase family 1
60s_ribosomal 60s Acidic ribosomal protein 1
A1pp Appr-1"-p processing enzyme family 1
AAA ATPases associated with various cellular activities (AAA) 11
ABC-3 ABC 3 transport family 1
ABC2_membrane ABC-2 type transporter 4
ABC_membrane ABC transporter transmembrane region. 5
ABC_tran ABC transporter 98
ACT ACT domain 11
AFOR Aldehyde ferredoxin oxidoreductase 3
AFOR_N Aldehyde ferredoxin oxidoreductase, N-terminal domain 3
AICARFT_IMPCHas AICARFT/IMPCHase bienzyme 1
AIRC AIR carboxylase 2
AIRS AIR synthase related protein 6
AIRS_C AIR synthase related protein, C-terminal domain 6
ALAD Delta-aminolevulinic acid dehydratase 1
AMP-binding AMP-binding enzyme 6
AP_endonucleas1 AP endonuclease family 1 1
AP_endonulease2 AP endonuclease family 2 3
ASNC_trans_reg AsnC family 2
ATP-synt ATP synthase 1
ATP-synt_A ATP synthase A chain 1
ATP-synt_A-c ATP synthase Alpha chain, C terminal 1
ATP-synt_B ATP synthase B/B' CF(0) 1
ATP-synt_C ATP synthase subunit C 2
ATP-synt_D ATP synthase subunit D 1
ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain 1
ATP-synt_F ATP synthase (F/14-kDa) subunit 1
ATP-synt_ab ATP synthase alpha/beta family 4
ATP-synt_ab_C ATP synthase ab C terminal 4
ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain 4
ATP_synt_B_c ATP synthase beta chain, carboxyl terminus 1
ATZ_TRZ Chlorohydrolase 2
Abi CAAX amino terminal protease family 5
Acetate_kinase Acetokinase family 1
Acetyltransf Acetyltransferase (GNAT) family 27
Aconitase_C Aconitase C-terminal domain 4
Acylphosphatase Acylphosphatase 2
Adenine_deam Adenine deaminase 1
Adenylate_cyc_2 Adenylate cyclase 1
Adenylsucc_synt Adenylosuccinate synthetase 2
AdoHcyase S-adenosyl-L-homocysteine hydrolase 1
AhpC-TSA AhpC/TSA family 3
Aldolase_II Class II Aldolase and Adducin N-terminal domain. 1
Amidase Amidase 1
Ammonium_transp Ammonium Transporter Family 3
ApbE ApbE family 1
Arch_flagellin Archaebacterial flagellin 3
ArgJ ArgJ family 1
Arg_deiminase Arginine deiminase 1
Arginosuc_synth Arginosuccinate synthase 1
Armadillo_seg Armadillo/beta-catenin-like repeats 1
Asn_synthase Asparagine synthase 1
Asparaginase Asparaginase 1
B12-binding B12 binding domain 15
B12-binding_2 B12 binding domain 14
BNR BNR repeat 1
BPD_transp Binding-protein-dependent transport systems inner membrane component 37
BPL Biotin protein ligase 1
BPL_C Biotin protein ligase C terminal domain 2
Bac_Ubq_Cox Bacterial Cytochrome Ubiquinol Oxidase 1
Bacterial_PQQ PQQ enzyme repeat 20
Band_7 Band 7 family 1
BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family 1
Big_2 Bacterial Ig-like domain (group 2) 3
BioY BioY family 1
Biotin_carb_C Biotin carboxylase C-terminal domain 1
Biotin_synth Biotin synthase 3
CAT Chloramphenicol acetyltransferase 1
CBAH Choloylglycine hydrolase 1
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1
CBIA Cobyrinic acid a,c-diamide synthase 3
CBS CBS domain 15
CDP-OH_P_transf CDP-alcohol phosphatidyltransferase 3
CMD Carboxymuconolactone decarboxylase 10
CN_hydrolase Carbon-nitrogen hydrolase 3
CO_dh CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 2
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain 2
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 1
CPSase_L_chain Carbamoyl-phosphate synthase (CPSase) 2
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain 1
CRCB CrcB-like protein 3
Cache Cache domain 1
Cation_ATPase_C Cation transporting ATPase, C-terminus 3
Cation_ATPase_N Cation transporter/ATPase, N-terminus 4
Cation_efflux Cation efflux family 8
CbiA Cobyrinic acid a,c-diamide synthase 3
CbiC Precorrin-8X methylmutase 1
CbiD CbiD 1
CbiM CbiM 3
CbiN Cobalt transport protein component CbiN 1
CbiQ Cobalt transport protein 8
CbiX CbiX 2
CheB_methylest CheB methylesterase 4
CheR CheR methyltransferase 4
CheW CheW-like domain 5
Chorismate_mut Chorismate mutase 2
Chorismate_synt Chorismate synthase 1
CitG CitG family 1
CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1
CobS Cobalamin-5-phosphate synthase 1
CorA CorA-like Mg2+ transporter protein 1
CstA Carbon starvation protein CstA 1
Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme 2
CytC_asm Cytochrome C assembly protein 1
Cytidylyl_trans Cytidylyltransferase 1
Cytidylyltransf Cytidylyltransferase 3
Cyto_ox_2 Cytochrome oxidase subunit II 1
DEAD DEAD/DEAH box helicase 10
DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase 1
DHDPS Dihydrodipicolinate synthetase family 1
DHH DHH family 7
DHHA1 DHHA1 domain 6
DHOdehase Dihydroorotate dehydrogenase 1
DHPS Dihydropteroate synthase 1
DHquinase_I Type I 3-dehydroquinase 1
DLH Dienelactone hydrolase family 3
DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase 2
DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus 1
DNA_ligase DNA ligase 2
DNA_mis_repair DNA mismatch repair protein 1
DNA_photolyase DNA photolyase 1
DNA_pol_B DNA polymerase family B 1
DNA_polymeraseX DNA polymerase X family 1
DNA_primase_S DNA primase small subunit 1
DNA_repair DNA repair exonuclease 2
DNA_topoisoII DNA topoisomerase II (N-terminal region) 1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A 1
DS Deoxyhypusine synthase 3
DUF101 Protein of unknown function 1
DUF102 Protein of unknown function 1
DUF105 Domain of unknown function 1
DUF106 Integral membrane protein 1
DUF107 Protein of unknown function 1
DUF108 Domain of unknown function 1
DUF109 Protein of unknown function 1
DUF110 Integral membrane protein 4
DUF111 Protein of unknown function 1
DUF112 Integral membrane protein 1
DUF113 Protein of unknown function 1
DUF114 Protein of unknown function 1
DUF115 Protein of unknown function 1
DUF116 Protein of unknown function 2
DUF118 Protein of unknown function 3
DUF120 Domain of unknown function 1
DUF121 Protein of unknown function 1
DUF122 Protein of unknown function 1
DUF123 Domain of unknown function 1
DUF124 Protein of unknown function 2
DUF126 Protein of unknown function 2
DUF127 Protein of unknown function 1
DUF128 Domain of unknown function 2
DUF129 Protein of unknown function 2
DUF131 Protein of unknown function 1
DUF133 Protein of unknown function 1
DUF134 Protein of unknown function 3
DUF135 Protein of unknown function 1
DUF136 Protein of unknown function 1
DUF137 Protein of unknown function 1
DUF14 Domain of unknown function 4
DUF142 Domain of unknown function DUF142 6
DUF147 Domain of unknown function DUF147 1
DUF15 Domain of unknown function 1
DUF151 Uncharacterized ACR, COG1259 1
DUF153 Uncharacterized ACR, COG1433 5
DUF157 Uncharacterized protein PaaI, COG2050 1
DUF158 Uncharacterized LmbE-like protein, COG2120 1
DUF160 Uncharacterized ACR, YjeK family COG1509 1
DUF165 Uncharacterized ACR, YhhQ family COG1738 1
DUF166 Uncharacterized ArCR, COG1810 2
DUF167 Uncharacterized ACR, YggU family COG1872 1
DUF169 Uncharacterized ArCR, COG2043 4
DUF173 Uncharacterized ACR, COG1354 1
DUF176 Uncharacterized ACR, YneC family COG1359 1
DUF181 Uncharacterized ACR, COG1944 1
DUF190 Uncharacterized ACR, COG1993 3
DUF196 Uncharacterized ACR, COG1343 1
DUF197 Uncharacterized ACR, COG1458 1
DUF198 Uncharacterized ACR, COG1469 1
DUF201 Domain of unknown function DUF201 2
DUF203 Domain of unknown function 1
DUF204 Domain of unknown function DUF 1
DUF209 Uncharacterized BCR, YhhW family COG1741 1
DUF21 Domain of unknown function 1
DUF214 Predicted permease 15
DUF217 Uncharacterized ACR, COG1753 1
DUF224 Domain of unknown function (DUF224) 6
DUF24 Protein of unknown function 3
DUF25 Domain of unknown function 1
DUF27 Domain of unknown function 1
DUF3 Cof family 1
DUF34 Domain of unknown function 1
DUF35 Domain of unknown function 1
DUF39 Domain of unknown function 2
DUF44 Domain of unknown function 2
DUF45 Protein of unknown function 2
DUF46 Putative integral membrane protein 1
DUF47 Protein of unknown function 1
DUF48 Protein of unknown function 1
DUF5 Domain found in bacterial signal proteins 3
DUF51 Protein of unknown function 1
DUF52 Protein of unknown function 1
DUF53 Protein of unknown function 1
DUF54 Protein of unknown function 2
DUF56 Integral membrane protein 2
DUF57 Protein of unknown function 1
DUF58 Protein of unknown function 2
DUF59 Domain of unknown function 3
DUF6 Integral membrane protein 6
DUF60 Domain of unknown function 1
DUF62 Protein of unknown function 1
DUF63 Membrane protein of unknown function 1
DUF64 Protein of unknown function 1
DUF65 Protein of unknown function 5
DUF66 Protein of unknown function 1
DUF67 Protein of unknown function 1
DUF68 Protein of unknown function 1
DUF69 Protein of unknown function 1
DUF7 Integral membrane protein 1
DUF71 Domain of unknown function 1
DUF72 Protein of unknown function 1
DUF74 Domain of unknown function 1
DUF75 Protein of unknown function 2
DUF79 Protein of unknown function 4
DUF81 Domain of unknown function 1
DUF83 Domain of unknown function 1
DUF85 Domain of unknown function 1
DUF86 Protein of unknown function 3
DUF88 Protein of unknown function 1
DUF89 Protein of unknown function 1
DUF90 Domain of unknown function 6
DUF92 Integral membrane protein 1
DUF93 Protein of unknown function 2
DUF94 Domain of unknown function 1
DUF95 Integral membrane protein 1
DUF98 Protein of unknown function 1
DUF99 Protein of unknown function 1
Dala_Dala_ligas D-ala D-ala ligase 1
DapB Dihydrodipicolinate reductase 1
DeoC Deoxyribose-phosphate aldolase 2
Desulfoferrodox Desulfoferrodoxin 1
Dihydrooratase Dihydroorotase-like 1
Dihydroorotase Dihydroorotase-like 1
Diphthamide_syn Putative diphthamide synthesis protein 1
DnaJ DnaJ domain 2
DnaJ_C DnaJ C terminal region 1
DnaJ_CXXCXGXG DnaJ central domain (4 repeats) 1
DrsE DsrE-like protein 1
DsbD Cytochrome C biogenesis protein transmembrane region 3
E1-E2_ATPase E1-E2 ATPase 9
EF1BD EF-1 guanine nucleotide exchange domain 1
EFG_C Elongation factor G C-terminus 1
EPSP_syntase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 1
ERCC4 ERCC4 domain 1
Epimerase NAD dependent epimerase/dehydratase family 7
Exci_endo_N Endo/excinuclease amino terminal domain 1
FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family 1
FAD_binding_4 FAD binding domain 2
FKBP FKBP-type peptidyl-prolyl cis-trans isomerases 4
FMN_dh FMN-dependent dehydrogenase 1
FTR Formylmethanofuran--tetrahydromethanopterin formyltransferase 1
FTR_C FTR, proximal lobe 1
FUR Ferric uptake regulator family 2
Fasciclin Fasciclin domain 2
FdhD-NarQ FdhD/NarQ family 1
Fe-ADH Iron-containing alcohol dehydrogenases 1
Fe_dep_repr_C Iron dependent repressor, metal binding and dimerisation domain 3
Fe_dep_repress Iron dependent repressor 3
FecCD_family FecCD transport family 13
FeoB Ferrous iron transport protein B 2
Fibrillarin Fibrillarin 1
Flavin_Reduct Flavin reductase like domain 2
Flavoprotein Flavoprotein 4
FlpD Methyl-viologen-reducing hydrogenase, delta subunit 1
FtsJ FtsJ cell division protein 3
FwdE Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE 5
GAF GAF domain 13
GARS Phosphoribosylglycinamide synthetase (GARS) 1
GARS_B Phosphoribosylglycinamide synthetase, B domain 1
GARS_C Phosphoribosylglycinamide synthetase, C domain 1
GARS_N Phosphoribosylglycinamide synthetase, N domain 1
GATase Glutamine amidotransferase class-I 8
GATase_2 Glutamine amidotransferases class-II 3
GFO_IDH_MocA Oxidoreductase family 1
GHMP_kinases GHMP kinases putative ATP-binding proteins 1
GLFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2
GLFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2
GMP_synt_C GMP synthase C terminal domain 1
GSPII_E Bacterial type II secretion system protein 5
GTP1_OBG GTP1/OBG family 4
GTP_EFTU Elongation factor Tu family 4
Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit 1
Glu_synthase Conserved region in glutamate synthase 1
GlutR Glutaminyl-tRNA reductase 1
Glycos_trans_3N Glycosyl transferase family, helical bundle domain 2
Glycos_transf_1 Glycosyl transferases group 1 20
Glycos_transf_2 Glycosyl transferases 14
Glycos_transf_3 glycosyl transferase family 2
Glyoxalase Glyoxalase 3
GntP_permease GntP family permease 1
Grp1_Fun34_YaaH GPR1/FUN34/yaaH family 3
GrpE GrpE 1
HAMP HAMP domain 2
HATPase_c Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase 57
HD HD domain 3
HEM4 Uroporphyrinogen-III synthase HemD 1
HHH Helix-hairpin-helix motif. 1
HIT HIT family 1
HK Hydroxyethylthiazole kinase family 1
HMA Heavy-metal-associated domain 5
HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase 1
HMGL-like HMGL-like 7
HMG_CoA_synt Hydroxymethylglutaryl-coenzyme A synthase 1
HNH HNH endonuclease 1
HRDC HRDC domain 1
HSP20 Hsp20/alpha crystallin family 3
HSP70 Hsp70 protein 2
HTH_3 Helix-turn-helix 9
HTH_4 Helix-turn-helix protein, copG family 4
HTH_5 Bacterial regulatory protein, arsR family 12
HTH_7 Helix-turn-helix domain of resolvase 9
Ham1p_like Ham1 family 1
HesB-like HesB-like domain 1
HhH-GPD HhH-GPD superfamily base excision DNA repair protein 5
HisG ATP phosphoribosyltransferase 1
His_biosynth Histidine biosynthesis protein 2
Hist_deacetyl Histone deacetylase family 1
Histidinol_dh Histidinol dehydrogenase 1
Homoserine_dh Homoserine dehydrogenase 1
Hpt Hpt domain 2
HupF_HypC HupF/HypC family 1
HycI Hydrogenase maturation protease 2
Hydantoinase Hydantoinase/oxoprolinase 2
Hydantoinase_A Hydantoinase/oxoprolinase 10
Hydantoinase_B Hydantoinase B/oxoprolinase 1
Hydrolase haloacid dehalogenase-like hydrolase 19
HypA Hydrogenase expression/synthesis hypA family 2
HypB_UreG HypB/UreG nucleotide-binding domain 1
HypD Hydrogenase formation hypA family 1
IF-2B Initiation factor 2 subunit family 2
IF2 Initiation factor 2 1
IGPD Imidazoleglycerol-phosphate dehydratase 1
IGPS Indole-3-glycerol phosphate synthases 1
ILVD_EDD Dehydratase family 2
IMP4 Domain of unknown function 1
IMS impB/mucB/samB family 1
IlvC Acetohydroxy acid isomeroreductase 1
Inos-1-P_synth Myo-inositol-1-phosphate synthase 2
Isochorismatase Isochorismatase family 2
IstB IstB-like ATP binding protein 19
K+_trans K+ potassium transporter 1
KE2 KE2 family protein 1
KH-domain KH domain 6
KTN KTN NAD-binding domain 9
L15 Ribosomal protein L15 2
LMWPc Low molecular weight phosphotyrosine protein phosphatase 1
LON ATP-dependent protease La (LON) domain 1
LRR Leucine Rich Repeat 1
Lipoprotein_4 Adhesion lipoprotein 1
LysE LysE type translocator 2
MCH Cyclohydrolase (MCH) 1
MCM MCM2/3/5 family 2
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 2
MCR_D Methyl-coenzyme M reductase operon protein D 1
MCR_alpha Methyl-coenzyme M reductase alpha subunit 1
MCR_alpha_N Methyl-coenzyme M reductase alpha subunit, N-terminal domain 1
MCR_beta Methyl-coenzyme M reductase beta subunit 1
MCR_beta_N Methyl-coenzyme M reductase beta subunit, N-terminal domain 1
MCR_gamma Methyl-coenzyme M reductase gamma subunit 1
MGS MGS-like domain 2
MMR_HSR1 GTPase of unknown function 1
MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase 1
MTHFR Methylenetetrahydrofolate reductase 1
Maf Maf-like protein 1
MannoseP_isomer Mannose-6-phosphate isomerase 2
MarR MarR family 11
Met_10 Met-10+ like-proteins 3
Metalloenzyme Metalloenzyme superfamily 3
Methylase_M Type I restriction modification system, M protein 1
Methylase_S Type I restriction modification DNA specificity domain 6
Methyltransf_1 6-O-methylguanine DNA methyltransferase 1
Methyltransf_1N 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 1
Methyltransf_2 O-methyltransferase 1
Methyltransf_3 O-methyltransferase 1
Mg_chelatase Magnesium chelatase, subunit ChlI 3
MgtE Divalent cation transporter 2
MoCF_biosynth Molybdenum cofactor biosynthesis protein 2
MoaA_NifB_PqqE moaA / nifB / pqqE family 16
MoaC MoaC family 1
ModE N-terminal HTH domain of molybdenum-binding protein 1
MoeA Molydopterin converting factor subunit 2 1
Molydop_binding Molydopterin dinucleotide binding domain 4
Monooxygenase Monooxygenase 1
MotA_ExbB MotA/TolQ/ExbB proton channel family 3
Mov34 Mov34 family 1
Mtap_PNP phosphorylases family 2 1
MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit 2
MttA_Hcf106 mttA/Hcf106 family 2
Mur_ligase Mur ligase family 1
MutS_C DNA mismatch repair proteins, mutS family 1
MutS_N MutS family, N-terminal putative DNA binding domain 1
N6_Mtase N-6 DNA Methylase 2
NAC NAC domain 1
NADHdh NADH dehydrogenases 2
NADHdh_2 NAD(P)H dehydrogenase (quinone) 2
NAD_synthase NAD synthase 3
NDK Nucleoside diphosphate kinases 1
NHL NHL repeat 3
NIR_SIR Nitrite and sulphite reductase 4
NSF NSF attachment protein 1
NTP_transf_2 Nucleotidyltransferase domain 11
NTP_transferase Nucleotidyl transferase 7
Na_Ala_symp Sodium:alanine symporter family 1
Na_Ca_Ex Sodium/calcium exchanger protein 3
Na_H_Exchanger Sodium/hydrogen exchanger family 5
Na_K_ATPase_C Na+/K+ ATPase C-terminus 1
Na_K_ATPase_N Na+/K+ ATPase C-terminus 3
NadA Quinolinate synthetase A protein 2
NiFeSe_Hases Nickel-dependent hydrogenases 3
NifU_N NifU-like N terminal domain 3
Nitroreductase Nitroreductase family 5
Nop Putative snoRNA binding domain 1
ODC_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family 1
OMPdecase Orotidine 5'-phosphate decarboxylases 1
OTCace Aspartate/ornithine carbamoyltransferase 2
OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2
Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain 2
Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase 2
P-II Nitrogen regulatory protein P-II 8
P5CR Delta 1-pyrroline-5-carboxylate reductase 1
PAC PAC motif 51
PALP Pyridoxal-phosphate dependent enzyme 5
PAP2 PAP2 superfamily 2
PAPS_reduct Phosphoadenosine phosphosulfate reductase family 2
PAS PAS domain 38
PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 2
PCNA Proliferating cell nuclear antigen 1
PCNA_C Proliferating cell nuclear antigen, C-terminal domain 1
PDH Prephenate dehydrogenase 1
PDT Prephenate dehydratase 1
PEP-utilizers PEP-utilizing enzymes 4
PET112 PET112 family 2
PGAM Phosphoglycerate mutase family 2
PGK Phosphoglycerate kinases 2
PGM_PMM Phosphoglucomutase/phosphomannomutase 3
PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3
PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 3
PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 3
PG_binding_1 Putative peptidoglycan binding domain 1
PHO4 Phosphate transporter family 1
PHP_C PHP domain C-terminal region 5
PHP_N PHP domain N-terminal region 7
PIN PIN domain 3
PK Pyruvate kinase 1
PKD PKD domain 60
PK_C Pyruvate kinase, alpha/beta domain 1
PMSR Peptide methionine sulfoxide reductase 1
PMT Dolichyl-phosphate-mannose-protein mannosyltransferase 1
PNP_UDP_1 Phosphorylase family 1
POR Pyruvate ferredoxin/flavodoxin oxidoreductase 5
POR_N Pyruvate flavodoxin/ferredoxin oxidoreductase (N terminus) 6
PPDK_N_term Pyruvate phosphate dikinase, PEP/pyruvate binding domain 4
PP_kinase Polyphosphate kinase 1
PRA-CH Phosphoribosyl-AMP cyclohydrolase 1
PRA-PH Phosphoribosyl-ATP pyrophosphohydrolase 1
PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase 1
PS_Dcarbxylase Phosphatidylserine decarboxylase 1
PTA_PTB Phosphate acetyl/butaryl transferase 1
PTPS 6-pyruvoyl tetrahydropterin synthase 2
PUA PUA domain 6
PYC_OADA Conserved carboxylase domain 1
ParA ParA family ATPase 9
PcrB PcrB family 1
Pectinesterase Pectinesterase 1
Pentapeptide Pentapeptide repeats (8 copies) 5
Peptidase_C1 Papain family cysteine protease 5
Peptidase_M13 Peptidase family M13 1
Peptidase_M20 Peptidase family M20/M25/M40 2
Peptidase_M22 Glycoprotease family 1
Peptidase_M24 metallopeptidase family M24 3
Peptidase_M3 Peptidase family M3 1
Peptidase_M4 Thermolysin family peptidase 2
Peptidase_M48 Peptidase family M48 2
Peptidase_M4_C Thermolysin metallopeptidase, alpha-helical domain 2
Peptidase_M50 Sterol-regulatory element binding protein (SREBP) site 2 protease 1
Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family 1
Peptidase_S8 Subtilase family 4
Peptidase_S9 Prolyl oligopeptidase family 1
Peptidase_U32 Peptidase family U32 3
Peptidase_U7 Peptidase family U7 1
Peripla_BP_2 Periplasmic binding protein 21
Phage_integrase "Phage" integrase family 8
Phytoene_dh Phytoene dehydrogenase related enzyme 1
PhzC-PhzF Phenazine biosynthesis-like protein 1
PmbA_TldD Putative modulator of DNA gyrase 2
Polysac_deacet Polysaccharide deacetylase 5
Polysacc_synt Polysaccharide biosynthesis protein 6
Porphobil_deam Porphobilinogen deaminase 1
Ppx-GppA Ppx/GppA phosphatase family 2
Pribosyltran Phosphoribosyl transferase domain 9
PseudoU_synth_1 tRNA pseudouridine synthase 1
PstS Phosphate-binding protein 3
PyrI Aspartate carbamoyltransferase regulatory chain 1
PyrI_C Aspartate carbamoyltransferase regulatory chain, metal binding domain 1
Pyrophosphatase Inorganic pyrophosphatase 1
QRPTase Quinolinate phosphoribosyl transferase 2
QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain 1
RADICAL_ACTIVATING Radical activating enzymes 2
RCT RNA 3'-terminal phosphate cyclase 1
RF1 eRF1-like proteins 3
RIO1 RIO1/ZK632.3/MJ0444 family 2
RNA_POL_M_15KD RNA polymerases M/15 Kd subunits 2
RNA_pol_A RNA polymerase alpha subunit 1
RNA_pol_A2 RNA polymerase A/beta'/A" subunit 1
RNA_pol_B RNA polymerase beta subunit 2
RNA_pol_H RNA polymerases H / 23 kDa subunit 1
RNA_pol_K RNA polymerases K / 14 to 18 kDa subunit 1
RNA_pol_L RNA polymerases L / 13 to 16 kDa subunit 1
RNA_pol_N RNA polymerases N / 8 kDa subunit 1
RNase_HII Ribonuclease HII 1
RNase_PH 3' exoribonuclease family 1
RTC RNA 3'-terminal phosphate cyclase 1
Radical_activat Radical activating enzyme 2
RecF RecF protein 2
Rhodanese Rhodanese-like domain 4
Rhomboid Rhomboid family 1
RibD_C RibD C-terminal domain 2
Ribosomal_L1 L1P family of ribosomal proteins 1
Ribosomal_L10 Ribosomal protein L10 1
Ribosomal_L10e Ribosomal L10 1
Ribosomal_L11 Ribosomal protein L11 1
Ribosomal_L13 Ribosomal protein L13 1
Ribosomal_L14 Ribosomal protein L14 1
Ribosomal_L15e Ribosomal L15 1
Ribosomal_L18p Ribosomal L18p/L5e family 1
Ribosomal_L19e Ribosomal protein L19e 1
Ribosomal_L2 Ribosomal Proteins L2 1
Ribosomal_L21e Ribosomal protein L21e 1
Ribosomal_L22 Ribosomal protein L22 1
Ribosomal_L23 Ribosomal protein L23 1
Ribosomal_L24 KOW motif 2
Ribosomal_L24e Ribosomal protein L24e 1
Ribosomal_L29 Ribosomal L29 protein 2
Ribosomal_L3 Ribosomal protein L3 1
Ribosomal_L30 Ribosomal protein L30p/L7e 1
Ribosomal_L31e Ribosomal protein L31e 1
Ribosomal_L32e Ribosomal protein L32 1
Ribosomal_L37ae Ribosomal L37ae protein family 1
Ribosomal_L4 Ribosomal protein L4/L1 family 1
Ribosomal_L40e Ribosomal L40e family 1
Ribosomal_L44 Ribosomal protein L44 1
Ribosomal_L5 Ribosomal protein L5 1
Ribosomal_L5_C ribosomal L5P family C-terminus 1
Ribosomal_L6 Ribosomal protein L6 1
Ribosomal_L7Ae Ribosomal protein L7Ae 2
Ribosomal_LX Ribosomal LX protein 1
Ribosomal_S10 Ribosomal protein S10p/S20e 1
Ribosomal_S11 Ribosomal protein S11 1
Ribosomal_S12 Ribosomal protein S12 1
Ribosomal_S13 Ribosomal protein S13/S18 1
Ribosomal_S14 Ribosomal protein S14p/S29e 1
Ribosomal_S15 Ribosomal protein S15 1
Ribosomal_S17 Ribosomal protein S17 2
Ribosomal_S19 Ribosomal protein S19 1
Ribosomal_S19e Ribosomal protein S19e 1
Ribosomal_S2 Ribosomal protein S2 1
Ribosomal_S24e Ribosomal protein S24e 1
Ribosomal_S27 Ribosomal protein S27a 1
Ribosomal_S27e Ribosomal protein S27 1
Ribosomal_S28e Ribosomal protein S28e 1
Ribosomal_S3Ae Ribosomal S3Ae family 1
Ribosomal_S3_C Ribosomal protein S3, C-terminal domain. 1
Ribosomal_S4e Ribosomal family S4e 1
Ribosomal_S5 Ribosomal protein S5 1
Ribosomal_S6e Ribosomal protein S6e 1
Ribosomal_S7 Ribosomal protein S7p/S5e 1
Ribosomal_S8 Ribosomal protein S8 1
Ribosomal_S8e Ribosomal protein S8e 1
Ribosomal_S9 Ribosomal protein S9/S16 1
Rieske Rieske [2Fe-2S] domain 2
Rnf-Nqr Rnf-Nqr subunit, membrane protein 2
RrnaAD Ribosomal RNA adenine dimethylases 5
RuBisCO_large Ribulose bisphosphate carboxylase, large chain 1
RuBisCO_large_N Ribulose bisphosphate carboxylase large chain, N-terminal domain 1
S1 S1 RNA binding domain 3
S4 S4 domain 2
SAICAR_synt SAICAR synthetase 1
SBF Sodium Bile acid symporter family 3
SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 1
SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 21
SDF Sodium:dicarboxylate symporter family 1
SEC-C SEC-C motif 2
SET SET domain 1
SHMT Serine hydroxymethyltransferase 1
SIS SIS domain 2
SKI Shikimate kinase 1
SMC_C SMC family, C-terminal domain 1
SMC_N SMC domain N terminal domain 2
SNF Sodium:neurotransmitter symporter family 2
SNF2_N SNF2 and others N-terminal domain 1
SNO SNO glutamine amidotransferase family 1
SOR_SNZ SOR/SNZ family 1
SRP19 SRP19 protein 1
SRP54 SRP54-type protein 2
SRP54_N SRP54-type protein, helical bundle domain 2
SSF Sodium:solute symporter family 3
STAS STAS domain 1
STT3 Oligosaccharyl transferase STT3 subunit 1
STphosphatase Ser/Thr protein phosphatase 1
SUI1 Translation initiation factor SUI1 1
SecD_SecF Protein export membrane protein 3
Semialdhyde_dh Semialdehyde dehydrogenase 2
Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain 2
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 1
Shikimate_DH Shikimate / quinate 5-dehydrogenase 1
Sm Sm protein 2
SpoU_methylase SpoU rRNA Methylase family 1
Sua5_yciO_yrdC SUA5/yciO/yrdC family 2
Sulfatase Sulfatase 3
Sulfate_transp Sulfate transporter family 1
SurE Survival protein SurE 1
TBP Transcription factor TFIID (or TATA-binding protein, TBP) 3
TFIIE_alpha TFIIE alpha subunit 1
TFIIS Transcription factor S-II (TFIIS) 2
TGS TGS domain 2
TGT Queuine tRNA-ribosyltransferase 2
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase 1
THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 1
TIM Triosephosphate isomerase 1
TMP-TENI Thiamine monophosphate synthase/TENI 1
TPP_enzymes Thiamine pyrophosphate enzymes 4
TPP_enzymes_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 5
TPP_enzymes_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4
TPR TPR Domain 36
TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases. 6
TRM N2,N2-dimethylguanosine tRNA methyltransferase 1
TS-N TS-N domain 1
TatD_DNase TatD related DNase 1
Thi4 Thi4 family 1
ThiC ThiC family 3
ThiF_family ThiF family 1
ThiI Thiamine biosynthesis protein (ThiI) 1
ThiJ ThiJ/PfpI family 2
Thymidylate_kin Thymidylate kinase 1
Top6A Type II DNA topoisomerase 1
Topoisom_bac Prokaryotic DNA topoisomerase 2
Toprim Toprim domain 5
TraB TraB family 1
Translin Translin family 1
Transpo_mutator Transposase, Mutator family 1
Transposase_11 Transposase (IS4 family) 1
Transposase_12 Transposase 2
Transposase_13 Transposase 8
Transposase_15 Transposase 2
Transposase_17 Transposase IS200 like 1
Transposase_19 Transposase 4
Transposase_2 Probable transposase 5
Transposase_20 Transposase IS116/IS110/IS902 family 4
Transposase_6 Transposase 8
TrkA Potassium channel 9
TrkH Sodium transport protein 3
TruB_N TruB family pseudouridylate synthase (N terminal domain) 1
UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family 1
UPF0001 Uncharacterized protein family UPF0001 1
UPF0003 Uncharacterized protein family UPF0003 7
UPF0004 Uncharacterized protein family UPF0004 3
UPF0006 Uncharacterized protein family 1
UPF0013 Uncharacterized membrane protein family 10
UPF0019 Uncharacterized protein family SNZ 1
UPF0020 Uncharacterized protein family UPF0020 1
UPF0021 Uncharacterized protein family UPF0021 1
UPF0023 Uncharacterized protein family UPF0023 1
UPF0024 Uncharacterized protein family UPF0024 1
UPF0025 Uncharacterized protein family UPF0025 2
UPF0027 Uncharacterized protein family UPF0027 1
UPF0029 Uncharacterized protein family UPF0029 1
UPF0030 Uncharacterized protein family UPF0030 1
UPF0031 Uncharacterized protein family UPF0031 1
UPF0032 MttB family 2
UPF0033 Uncharacterized protein family UPF0033 1
UPF0034 Uncharacterized protein family UPF0034 1
UPF0036 Uncharacterized protein family UPF0036 1
UPF0044 Uncharacterised protein family 1
UPF0047 Uncharacterised protein family 2
UPF0051 Uncharacterized protein family (UPF0051) 2
UPF0052 Uncharacterised protein family 1
UPF0056 Uncharacterised protein family 1
UPF0058 Uncharacterised protein family 2
UPF0060 Uncharacterized BCR, YnfA/UPF0060 family 1
UPF0062 Uncharacterized ACR, YexA/UPF0062 family 1
UPF0066 Uncharacterised protein family 1
UPF0086 Domain of unknown function UPF0086 1
UPF0096 Protein of unknown function UPF0096 1
UPF0099 Domain of unknown function UPF0099 1
UPF0118 Domain of unknown function DUF20 5
UPP_synthetase Putative undecaprenyl diphosphate synthase 2
URO-D Uroporphyrinogen decarboxylase (URO-D) 12
UVR UvrB/uvrC motif 2
UbiA UbiA prenyltransferase family 5
Ubie_methyltran ubiE/COQ5 methyltransferase family 19
Usp Universal stress protein family 8
UvrD-helicase UvrD/REP helicase 3
V4R V4R domain 1
VAT-Nn VAT-Nn domain 3
V_ATPase_sub_a V-type ATPase 116kDa subunit family 1
WD40 WD domain, G-beta repeat 3
XPG_I XPG I-region 1
XPG_N XPG N-terminal domain 1
Zn_carbOpept Zinc carboxypeptidase 1
aa_permeases Amino acid permease 6
aakinase Amino acid kinase family 6
abhydrolase alpha/beta hydrolase fold 5
aconitase Aconitase family (aconitate hydratase) 3
adenylatekinase Adenylate kinase 1
adh_short short chain dehydrogenase 7
adh_short_C2 Short chain dehydrogenase/reductase C-terminus 3
adh_zinc Zinc-binding dehydrogenases 5
aldedh Aldehyde dehydrogenase family 5
aldo_ket_red Aldo/keto reductase family 7
alk_phosphatase Alkaline phosphatase 1
alpha-amylase Alpha amylase 3
aminotran_1 Aminotransferases class-I 6
aminotran_2 Aminotransferases class-II 3
aminotran_3 Aminotransferases class-III pyridoxal-phosphate 3
aminotran_4 Aminotransferase class IV 1
aminotran_5 Aminotransferases class-V 5
arginase Arginase family 1
biotin_lipoyl Biotin-requiring enzymes 1
catalase Catalase 1
chorismate_bind chorismate binding enzyme 1
citrate_synt Citrate synthase 1
cobN-Mg_chel CobN/Magnesium Chelatase 12
cobW Cobalamin synthesis protein/P47K 6
complex1_30Kd Respiratory-chain NADH dehydrogenase, 30 Kd subunit 2
complex1_49Kd Respiratory-chain NADH dehydrogenase, 49 Kd subunit 1
copper-bind Copper binding proteins, plastocyanin/azurin family 3
cpn10 Chaperonins 10 Kd subunit 1
cpn60_TCP1 TCP-1/cpn60 chaperonin family 7
crystall Beta/Gamma crystallin 1
dCMP_cyt_deam Cytidine and deoxycytidylate deaminase zinc-binding region 5
dTDP_sugar_isom dTDP-4-dehydrorhamnose 3,5-epimerase 1
dUTPase dUTPase 1
eIF-1a Eukaryotic initiation factor 1A 4
eIF-5a Eukaryotic initiation factor 5A hypusine (eIF-5A) 1
eIF-5a_N Eukaryotic initiation factor 5A hypusine, SH3-like barrel domain 1
eIF5_eIF2B Domain found in IF2B/IF5 1
eIF6 eIF-6 family 1
efhand EF hand 19
endotoxin delta endotoxin 1
enolase Enol-ase 1
fer4 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains. 70
fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 13
ferritin Ferritins 1
flavodoxin Flavodoxins 7
formyl_transf Formyl transferase 2
gln-synt Glutamine synthetase 2
glutaredoxin Glutaredoxin 1
gpdh glyceraldehyde 3-phosphate dehydrogenases 2
gpdh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 2
helicase_C Helicases conserved C-terminal domain 15
hexapep Bacterial transferase hexapeptide (four repeats) 14
inositol_P Inositol monophosphatase family 1
ion_trans Ion transport protein 1
isodh Isocitrate and isopropylmalate dehydrogenases 3
lactamase_B Metallo-beta-lactamase superfamily 15
ldh lactate/malate dehydrogenase 1
ldh_C lactate/malate dehydrogenase, alpha/beta C-terminal domain 1
lyase_1 Lyase 3
malic Malic enzyme 2
merR Bacterial regulatory proteins, merR family 1
molybdopterin Prokaryotic molybdopterin oxidoreductases 4
mutT Bacterial mutT protein 7
oxidored_FMN FMN oxidoreductase 2
oxidored_fad Oxidoreductase FAD/NAD-binding domain 2
oxidored_nitro Oxidoreductases, nitrogenase component 1 and other families 15
oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains 7
oxidored_q1_N NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 1
oxidored_q2 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 2
oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 2
oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit 4
peroxidase Peroxidase 1
pfkB pfkB family carbohydrate kinase 5
pkinase Eukaryotic protein kinase domain 1
polyprenyl_synt Polyprenyl synthetases 2
prenyltrans Prenyltransferase and squalene oxidase repeats 1
pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase 1
proteasome Proteasome A-type and B-type 2
pyr_redox Pyridine nucleotide-disulphide oxidoreductase class-I 6
pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 4
pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain 2
response_reg Response regulator receiver domain 20
ribonuc_red_lgC Ribonucleotide reductase, barrel domain 1
ribonucleo_red Ribonucleotide reductase 1
rubredoxin Rubredoxin 3
rve retroviral pol related endonuclease 42
rvt Reverse transcriptase (RNA-dependent DNA polymerase) 15
secY eubacterial secY protein 1
serpin Serpins (serine protease inhibitors) 4
signal Histidine kinase 30
sodcu Copper/zinc superoxide dismutase (SODC) 1
sodfe Iron/manganese superoxide dismutases (SODM) 1
sodfe_C Iron/manganese superoxide dismutases, C-terminal domain 1
sugar_tr Sugar (and other) transporter 7
tRNA-synt_1 tRNA synthetases class I (I, L, M and V) 4
tRNA-synt_1b tRNA synthetases class I (W and Y) 2
tRNA-synt_1c tRNA synthetases class I (E and Q) 1
tRNA-synt_1d tRNA synthetases class I (R) 2
tRNA-synt_1e tRNA synthetases class I (C) 1
tRNA-synt_1f tRNA synthetases class I (K) 1
tRNA-synt_2 tRNA synthetases class II (D, K and N) 2
tRNA-synt_2b tRNA synthetase class II (G, H, P, S and T) 5
tRNA-synt_2c tRNA synthetases class II (A) 2
tRNA-synt_2d tRNA synthetases class II (F) 2
tRNA_anti tRNA synthetase anti-codon binding domain 8
tRNA_bind Putative tRNA binding domain 1
tRNA_int_endo tRNA intron endonuclease 1
tRNA_int_endo_N tRNA intron endonuclease, N-terminal domain 1
tetR Bacterial regulatory proteins, tetR family 17
thiolase Thiolase 1
thiolase_C Thiolase, C-terminal domain 1
thiored Thioredoxin 5
transcript_fac2 Transcription factor TFIIB repeat 1
trp_syntA Tryptophan synthase alpha chain 1
tubulin Tubulin/FtsZ family 2
vATP-synt_AC39 ATP synthase (C/AC39) subunit 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 1
voltage_CLC Voltage gated chloride channels 1
vwa von Willebrand factor type A domain 3
zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger 2
zf-UBP Zn-finger in ubiquitin-hydrolases and other proteins 1