Setting up the MEDEA ChromoMap
At its minimum, the MEDEA ChromoMap only needs JSON formatted data for the assemblies. If you want to display syntenic alignments, you'll need to provide JSON formatted data for alignments. If you want to display densities, you'll need provide JSON formatted data for the feature tracks (for example, Blast) and JSON formatted data for individual features.
Following these steps for embedding the MEDEA ChromoMap on your web page and visualizing your data:
- Download all files.
- Create the required JSON formatted data for assemblies.
- Create the optional JSON formatted data for tracks, features, and alignments.
This example brings all the steps together to visualizes densities and alignments. Feel free to use it as a template in setting up the MEDEA ChromoMap on your site.
If you need help, please contact firstname.lastname@example.org.
If you'd like to be alerted to updates to the software, please email email@example.com to be added to the medea-announce mailing list. If you're internal to the Broad Insitute, you can add yourself to the medea-announce mailing list. This list is appropriate for those embedding MEDEA in their web sites--not for end users.