Genome and Assembly Statistics

	Size	Chrs	%GC	Genes	tRNAs	rRNAs	% Repeat
V. cholerae MO10	4.08 Mb	N/A	47.54	3,870	N/A	N/A	N/A
V. cholerae MAK 757	3.94 Mb	N/A	47.57	3,502	N/A	N/A	N/A
V. cholerae RC385	4.19 Mb	--	47.42	3,737	N/A	N/A	--

	Coverage	Assembly Size	Total Contig Length	Scaffolds	Scaffold N50	Contigs	Contig N50	%Q40
V. cholerae MO10	41x (454); 9x (TIGR)	4.08 Mb	4.03 Mb	27	1.04 Mb	84	178.79 Kb	98.86
V. cholerae MAK 757	19.14x (454); 6.59x (ABI)	3.94 Mb	3.92 Mb	12	1.08 Mb	43	227.38 Kb	98.48
V. cholerae RC385	16.70x (454); 3.74x (ABI)	4.19 Mb	4.12 Mb	23	1.07 Mb	97	93.03 Kb	96.43

We end-sequenced the following types of libraries:

Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
Chrs number of chromosomes
%GC GC content of scaffolds
Genes number of predicted protein-coding genes in genome
tRNAs number of predicted tRNA genes in genome
rRNAs number of predicted rRNA genes in genome
% Repeat percentage of genome comprised of reptitive sequences
Coverage -fold coverage of the genome sequenced
Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
Total Contig Length total length of all the contigs added together
Scaffolds number of scaffolds/supercontigs contained in a genome assembly
Scaffold N50 length of the scaffold containing the middle base of the genome
Contigs number of contigs contained in a genome assembly
Contig N50 length of the contig containing the middle base of the genome
%Q40 percentage of contig bases with quality scores equal to or greater than 40
Plasmid number of plasmids sequenced and subsequently assembled in the genome
Physical Coverage depth of coverage (applies to plasmids)
Fosmid number of fosmids sequenced and subsequently assembled in the genome
Physical Coverage depth of coverage (applies to fosmids)

V. cholerae