News
8/16/2010 Release of the results of Automated Annotation of 8 strains of Vibrio cholerae
Strain Name Total Genes Accession Submission Date V. cholerae V51 3,741 AAKI01000000 8/16/2010 V. cholerae V52 3,630 AAKJ01000000 8/16/2010 V. cholerae MZO-2 3,540 AAWF01000000 8/16/2010 V. cholerae MZO-3 3,762 AAUU01000000 8/16/2010 V. cholerae AM-19226 3,632 AATY01000000 8/16/2010 V. cholerae 623-39 3,626 AAWG01000000 8/16/2010 V. cholerae 2740-80 3,649 AAUT01000000 8/16/2010 V. cholerae 1587 3,821 AAUR01000000 8/16/2010 This annotated release presents:
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers
- tRNA predictions and RFam features
A full summary can be found here.
8/16/2010 The initial Release of our assemblies of 8 strains of Vibrio cholerae
Strain Name Coverage Accession Submission Date V. cholerae V51 12.22x (454); 5.4x (ABI) AAKI01000000 8/16/2010 V. cholerae V52 9.64x (454); 5.2x (ABI) AAKJ01000000 8/16/2010 V. cholerae MZO-2 19.14x (454); 7.2x (ABI) AAWF01000000 8/16/2010 V. cholerae MZO-3 19.37x (454); 6x (ABI) AAUU01000000 8/16/2010 V. cholerae AM-19226 16.23x (454); 8.77x (ABI) AATY01000000 8/16/2010 V. cholerae 623-39 22.32x (454); 5.51x (ABI) AAWG01000000 8/16/2010 V. cholerae 2740-80 20.62x (454); 6.71x (ABI) AAUT01000000 8/16/2010 V. cholerae 1587 17.04x (454); 6.01x (ABI) AAUR01000000 8/16/2010 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.
10/13/2009 Release of the results of Automated Annotation of 2 strains of Vibrio cholerae
Strain Name Total Genes Accession Submission Date V. cholerae MAK757 3,502 AAUS02000000 10/13/2009 V. cholerae RC385 3,737 AAKH02000000 10/13/2009 This annotated release presents:
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers
- tRNA predictions and RFam features
A full summary can be found here.
10/13/2009 The initial Release of our assemblies of 2 strains of Vibrio cholerae
Strain Name Coverage Accession Submission Date V. cholerae MAK757 2.49x (454); 7.1x (ABI) AAUS02000000 10/13/2009 V. cholerae RC385 12.4x (454); 4.3x (ABI) AAKH02000000 10/13/2009 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.
9/8/2008 Release of the results of Automated Annotation of Vibrio cholerae MO10
This annotated release presents:
- A predicted protein gene set of 3,870 genes
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers (GeneID, FGenesh)
- tRNA predictions
- RFam features
A full summary can be found here. Click here for a description of how the gene predictions were generated.
7/30/2008 The initial Release of our assembly of Vibrio cholerae MO10
The initial release of the 50X assembly for Vibrio cholerae MO10 strain. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAKF00000000. The version described in this release is the third version, AAKF03000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.
This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly