What's New?

05/26/06    Release of the results of Automated Annotation

This annotated release presents:

  • A predicted protein gene set of 7,798 genes
  • Protein BLAST databases
  • Precomputed results of BlastX and HMMer Analyses
  • Alternative proteins predicted by various gene callers (GeneID, FgeneSH, Genewise)
  • tRNA predictions
  • RFam features
  • Repeat Regions
  • Search and visualizations for all the features

A full summary can be found here. Click here for a description of how the gene predictions were generated.

9/13/2005    Initial release of 5X sequence assembly

The initial release of our 5X sequence assembly of the Uncinocarpus reesii strain UAMH 1704 assembly. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAIW00000000. The version described in this release is the first version, AAIW01000000.

Important information about this release can be found here.

This initial release allows:

  • BLAST searches against our 5X genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

There will be a second upcoming release containing the annotation of predicted genes and other genomic features.

Assembly Data

8/3/2005    Assembly 2

Sequencing Facts

  • 5X sequencing coverage of the genome
  • 582 contigs in 44 supercontigs (scaffolds)
  • 38.1 Kb average contig length (range 394 bp - 285.7 Kb)
  • 507.5 Kb average supercontig length (range 394 bp - 7.9 Mb)
  • 22.1 Mb total length of combined contigs (22,146,268 bp)
  • Average base lies in a contig of length 80.8 Kb
  • Average base lies within a supercontig of length 5.2 Mb