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Quick Links

  • Feature Search:Search for features by type. Filter on an additional text query if desired.
  • Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
  • GeneExpressionScope:
    Search for a gene over all published samples and explore the expression significance of the indicated gene.
  • ExpressionConnection:
    Search for a gene in the published data sets. You will be able to explore the gene expression of the indicated gene in each publication.
  • My Repository (sign in required): Access your saved microarray data sets for further analysis.
  • BLAST - search all genomes by sequencing similarity
  • Genes - Gene annotations by functional categories
  • Download - download data files for sequence and annotation

    • Genes Categorized by RFAM Family


    Family
    Family Description
    # of Genes
    5S_rRNA 5S ribosomal RNA 68
    5_8S_rRNA 5.8S ribosomal RNA 1
    RNaseP_bact_a Bacterial RNase P class A 27
    tmRNA tmRNA 26
    Intron_gpII Group II catalytic intron 16
    IRE Iron response element 1
    FMN FMN riboswitch (RFN element) 7
    TPP TPP riboswitch (THI element) 72
    yybP-ykoY yybP-ykoY leader 23
    SAM SAM riboswitch (S box leader) 3
    SRP_bact Bacterial signal recognition particle RNA 24
    Cobalamin Cobalamin riboswitch 69
    SSU_rRNA_5 Small subunit ribosomal RNA, 5' domain 66
    ctRNA_pGA1 ctRNA 1
    ydaO-yuaA ydaO/yuaA leader 39
    ykoK ykoK leader 27
    ykkC-yxkD ykkC-yxkD leader 1
    Glycine Glycine riboswitch 66