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Quick Links

  • Feature Search:Search for features by type. Filter on an additional text query if desired.
  • Gene Expression Publications: Search and browse publications with gene expression data that are stored in TBDB.
  • GeneExpressionScope:
    Search for a gene over all published samples and explore the expression significance of the indicated gene.
  • ExpressionConnection:
    Search for a gene in the published data sets. You will be able to explore the gene expression of the indicated gene in each publication.
  • My Repository (sign in required): Access your saved microarray data sets for further analysis.
  • BLAST - search all genomes by sequencing similarity
  • Genes - Gene annotations by functional categories
  • Download - download data files for sequence and annotation

    • Genome Visualization

    Argo

    The Argo Genome Browser is the Broad Institute's production tool for visualizing and manually annotating whole genomes. You can view any region in an embedded instance of Argo by going to Browse Regions, selecting a region and clicking "Argo Applet".

    For more information about Argo, go to the Argo website

    Feature Map

    The Feature map provides a lightweight rendering of features similar to Argo for those users without the ability to use Java applets. The feature map is not as feature rich as Argo, but provides a visual map of features for a given region.

    Similar to using Argo, you can view any region in the feature map by going to Browse Regions, chosing a region and clicking "FeatureMap". Also, while viewing any the details of any feature, such as a gene or an operon, you can click the "View in Feature map" link to see the feature in its context.