Gene Index
Gene finding methods
Information on how this putative gene set was created
Search for genes
Search database of all TB Genomes genes by name, locus, position, or PFAM domain
BLAST against protein set
Search predicted proteins using blastp.
Download FASTA files and supplementary material
FASTA files for genome sequence, genes, translated proteins are available.
Genes by PFAM domain
Genes categorized by HMMER hit to a PFAM protein domain
Genes for functional RNA by RFAM family
Features categorized by INFERNAL hit to an RFAM family
Do Gene Enrichment on list of specified genes
Enter a list of search criteria (gene loci, symbols or names) and perform gene enrichment on the resulting genes.
Get annotations for list of specified genes
Enter a list of search criteria (gene loci, symbols or names) and get a list of annotations for the resulting genes.
Operons
Searchable list of operon predictions
Genes indexed by functional annotation
- TBRXN: TbCyc Reactions
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- COG: COG Functional Categories
- TBPWY: TbCyc Pathways
- PWY: BioCyc Pathways
- EC: Enzyme Committee Nomenclature
- GO: Gene Ontology
Essential genes by TraSH
- TraSH List Genes found to be essential in transposon site hybridization (TraSH) experiments