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    • Assembly Statistics

    Assembly Stats

    Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
    M. tuberculosis H37Rv N/A 4.41 Mb 4.41 Mb 1 4.41 Mb 1 4.41 Mb -
    M. tuberculosis CDC1551 N/A 4.4 Mb 4.4 Mb 1 4.4 Mb 1 4.4 Mb -
    M. tuberculosis F11 (finished) N/A 4.42 Mb 4.42 Mb 1 4.42 Mb 1 4.42 Mb -
    M. tuberculosis C N/A 4.38 Mb 4.28 Mb 4 3.04 Mb 160 47.42 Kb 94.73
    M. tuberculosis Haarlem (draft) N/A 4.4 Mb 4.35 Mb 8 2.46 Mb 65 111.61 Kb 97.38
    M. tuberculosis H37Ra N/A 4.42 Mb 4.42 Mb 1 4.42 Mb 1 4.42 Mb -
    M. africanum GM041182 N/A 4.39 Mb 4.39 Mb 1 4.39 Mb 1 4.39 Mb -
    M. bovis AF2122/97 N/A 4.35 Mb 4.35 Mb 1 4.35 Mb 1 4.35 Mb -
    M. bovis BCG N/A 4.37 Mb 4.37 Mb 1 4.37 Mb 1 4.37 Mb -
    M. leprae TN N/A 3.27 Mb 3.27 Mb 1 3.27 Mb 1 3.27 Mb -
    M. marinum N/A 6.64 Mb 6.64 Mb 1 6.64 Mb 1 6.64 Mb -
    M. ulcerans Agy99 N/A 5.63 Mb 5.63 Mb 1 5.63 Mb 1 5.63 Mb -
    M. avium 104 N/A 5.48 Mb 5.48 Mb 1 5.48 Mb 1 5.48 Mb -
    M. avium k10 N/A 4.83 Mb 4.83 Mb 1 4.83 Mb 1 4.83 Mb -
    M. sp. MCS N/A 5.71 Mb 5.71 Mb 1 5.71 Mb 1 5.71 Mb -
    M. sp. KMS N/A 6.26 Mb 6.26 Mb 3 5.74 Mb 3 5.74 Mb -
    M. smegmatis MC2 155 N/A 6.99 Mb 6.99 Mb 1 6.99 Mb 1 6.99 Mb -
    M. vanbaalenii PYR-1 N/A 6.49 Mb 6.49 Mb 1 6.49 Mb 1 6.49 Mb -
    M. gilvum PYR-GCK N/A 5.98 Mb 5.98 Mb 4 5.62 Mb 4 5.62 Mb -
    M. abscessus N/A 5.09 Mb 5.09 Mb 2 5.07 Mb 2 5.07 Mb -
    M. sp. JLS N/A 6.05 Mb 6.05 Mb 1 6.05 Mb 1 6.05 Mb -
    R. sp. RHA1 N/A 9.7 Mb 9.7 Mb 4 7.8 Mb 4 7.8 Mb -
    N. farcinica IFM 10152 N/A 6.02 Mb 6.02 Mb 1 6.02 Mb 1 6.02 Mb -
    C. glutamicum ATCC 13032 N/A 3.28 Mb 3.28 Mb 1 3.28 Mb 1 3.28 Mb -
    C. efficiens YS-314 N/A 3.15 Mb 3.15 Mb 1 3.15 Mb 1 3.15 Mb -
    C. diphtheriae NCTC 13129 N/A 2.49 Mb 2.49 Mb 1 2.49 Mb 1 2.49 Mb -
    C. jeikeium K411 N/A 2.48 Mb 2.48 Mb 2 2.46 Mb 2 2.46 Mb -
    S. avermitilis MA-4680 N/A 9.12 Mb 9.12 Mb 2 9.03 Mb 2 9.03 Mb -
    S. coelicolor A3(2) N/A 8.67 Mb 8.67 Mb 1 8.67 Mb 1 8.67 Mb -
    A. cellulolyticus 11B N/A 2.44 Mb 2.44 Mb 1 2.44 Mb 1 2.44 Mb -
    R. sphaeroides N/A 4.6 Mb 4.6 Mb 7 3.19 Mb 9 3.19 Mb -
    P. acnes KPA171202 N/A 2.56 Mb 2.56 Mb 1 2.56 Mb 1 2.56 Mb -
    B. longum NCC2705 -- 2.26 Mb 2.26 Mb 1 2.26 Mb 1 2.26 Mb -

    Library Clones

    We end-sequenced the following types of libraries:

    Plasmid Fosmid

    Table Header Definitions

    • Coverage -fold coverage of the genome sequenced
    • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
    • Total Contig Length total length of all the contigs added together
    • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
    • Scaffold N50 length of the scaffold containing the middle base of the genome
    • Contigs number of contigs contained in a genome assembly
    • Contig N50 length of the contig containing the middle base of the genome
    • %Q40 percentage of contig bases with quality scores equal to or greater than 40
    • Plasmid number of plasmids sequenced and subsequently assembled in the genome
    • Fosmid number of fosmids sequenced and subsequently assembled in the genome