News

3/3/2010    The Updated release of our assembly and annotation of 1 strain of Streptomyces

Strain Name Coverage Total Genes Accession Submission Date
S. roseosporus NRRL 11379 Semi-finished 6,931 ABYX02000000 3/3/2010

This updated assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

This annotated release presents:

A full summary can be found here.

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

10/21/2009    Release of the results of Automated Annotation of 13 strains of Streptomyces

Strain Name Total Genes Accession Submission Date Notes
Streptomyces sp. SPB74 5,879 ABJG02000000 10/21/2009 Updated annot
S. pristinaespiralis ATCC 25486 7,009 ABJI02000000 10/21/2009 Updated annot
S. sviceus ATCC 29083 8,394 ABJJ02000000 10/21/2009 Updated annot
S. clavuligerus ATCC 27064 7,645 ABJH02000000 10/21/2009 Updated annot
Streptomyces sp. E14 6,198 ACUR01000000 10/21/2009 First annot release
Micromonospora sp. M42 6,093 ACQO01000000 10/21/2009 First annot release
Kutzneria sp. 744 10,200 ACQP01000000 10/21/2009 First annot release
Streptomyces sp. AA4 8,419 ACEV01000000 10/21/2009 First annot release
Streptomyces sp. C 7,540 ACEW01000000 10/21/2009 First annot release
Streptomyces sp. SPB78 6,387 ACEU01000000 10/21/2009 First annot release
S. griseoflavus Tu4000 6,338 ACFA01000000 10/21/2009 First annot release
S. hygroscopicus ATCC 53653 9,196 ACEX01000000 10/21/2009 First annot release
S. viridochromogenes DSM 40736 7,714 ACEZ01000000 10/21/2009 First annot release

This annotated release presents:

A full summary can be found here.

10/21/2009    The release of our assemblies of 6 strains of Streptomyces

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date Notes
Streptomyces sp. SPB74 12.3X (11.65X Q>20) ABJG02000000 10/21/2009 Updated wgs
S. pristinaespiralis ATCC 25486 9.54X (8.96X Q>20) ABJI02000000 10/21/2009 Updated wgs
S. sviceus ATCC 29083 8.37X (7.9X Q>20) ABJJ02000000 10/21/2009 Updated wgs
Streptomyces sp. E14 8.61X (8.1X Q>20) ACUR01000000 10/21/2009 First wgs release
Micromonospora sp. M42 7.62X (9.12X Q>20) ACQO01000000 10/21/2009 First wgs release
Kutzneria sp. 744 7.36X (7.11X Q>20) ACQP01000000 10/21/2009 First wgs release

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

This initial release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

6/4/2009    Release of the results of Automated Annotation of 1 strain of Streptomyces

Strain Name Total Genes Accession Submission Date
Streptomyces lividans TK24 7,551 ACEY01000000 6/4/2009

This annotated release presents:

A full summary can be found here.

4/9/2009    Release of the results of Automated Annotation of 1 strain of Micromonospora carbonacea

Strain Name Total Genes Accession Submission Date
Micromonospora carbonacea africana ATCC 39149 5,633 ACES01000000 4/9/2009

This annotated release presents:

A full summary can be found here.

2/9/2009    The initial release of our assemblies of 8 strains of Streptomyces

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
Streptomyces sp. AA4 10.9X (10.4X Q>20) ACEV01000000 2/9/2009
Streptomyces sp. C 8.17X (7.64X Q>20) ACEW01000000 2/9/2009
Streptomyces sp. SPB78 8.98X (8.3X Q>20) ACEU01000000 2/9/2009
S. griseoflavus Tu4000 8.7X (8.2X Q>20) ACFA01000000 2/9/2009
S. hygroscopicus ATCC 53653 6.1X (5.8X Q>20) ACEX01000000 2/9/2009
S. lividans TK24 12.6X (11.96X Q>20) ACEY01000000 2/9/2009
S. viridochromogenes DSM 40736 7.77X (7.4X Q>20) ACEZ01000000 2/9/2009
Micromonospora carbonacea africana ATCC 39149 7.8X (7.4X Q>20) ACES01000000 2/9/2009

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

This initial release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

2/9/2009    The Updated release of our assemblies of 4 strains of Streptomyces

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
Streptomyces sp. SPB74 12.3X (8.78X Q>20) ABJG02000000 2/9/2009
S. clavuligerus ATCC 27064 11.6X (9.2X Q>20) ABJH02000000 2/9/2009
S. pristinaespiralis ATCC 25486 9.5X (8.9X Q>20) ABJI02000000 2/9/2009
S. sviceus ATCC 29083 8.3X (7.9X Q>20) ABJJ02000000 2/9/2009

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

This initial release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly
Note: The annotation for these updated assemblies is in progress, therefore the annotation on our previously released assemblies is still available in this website.

1/23/2009    Release of our annotation of 5 strains of Streptomyces

Strain Name Total Genes Accession Submission Date
Streptomyces sp. Mg1 7,647 ABJF02000000 1/23/2009
Streptomyces ghanaensis ATCC 14672 7,891 ABYA01000000 1/23/2009
S. roseosporus NRRL 15998 6,925 ABYB01000000 1/23/2009
S. roseosporus NRRL 11379 7,203 ABYX01000000 1/23/2009
S. albus J1074 5,902 ABYC01000000 1/23/2009

This annotated release presents:

A full summary can be found here.

Note: This is a re-annotation release for Streptomyces sp. Mg1

10/30/2008    The initial release of our assemblies of 4 strains of Streptomyces

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
Streptomyces ghanaensis ATCC 14672 11X ABYA01000000 10/30/2008
S. roseosporus NRRL 15998 11X ABYB01000000 10/30/2008
S. roseosporus NRRL 11379 12x ABYX01000000 10/30/2008
S. albus J1074 13x ABYC01000000 10/30/2008

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

This initial release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

6/18/2008    Release of our annotation of 5 strains of Streptomyces

Strain Name Total Genes Accession Submission Date
Streptomyces sp. Mg1 6,975 ABJF01000000 6/18/2008
Streptomyces sp. SPB74 4,935 ABJG01000000 6/18/2008
S. clavuligerus ATCC 27064 6,448 ABJH01000000 6/18/2008
S. pristinaespiralis ATCC 25486 5,753 ABJI01000000 6/18/2008
S. sviceus ATCC 29083 8,265 ABJJ01000000 6/18/2008

This annotated release presents:

A full summary can be found here.

2/25/2008    The initial release of our assemblies of 5 strains of Streptomyces

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
Streptomyces sp. Mg1 12X ABJF01000000 2/20/2008
Streptomyces sp. SPB74 14X ABJG01000000 2/20/2008
S. clavuligerus ATCC 27064 11x ABJH01000000 2/20/2008
S. pristinaespiralis ATCC 25486 11x ABJI01000000 2/20/2008
S. sviceus ATCC 29083 9x ABJJ01000000 2/20/2008

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

This initial release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly