Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
S. sp. Mg1 9.3X (8.9X Q>20) 7.64 Mb 7.4 Mb 87 149.65 Kb 590 20.55 Kb 98.90
S. sp. SPB74 12.3X (11.65X Q>20) 6.97 Mb 6.51 Mb 2 6.81 Mb 845 13.13 Kb 98.47
S. clavuligerus ATCC 27064 11.6X (9.2X Q>20) 9.07 Mb 8.36 Mb 10 6.76 Mb 1,036 15.17 Kb 98.21
S. pristinaespiralis ATCC 25486 9.54X (8.96X Q>20) 8.13 Mb 7.63 Mb 1 8.13 Mb 844 17.56 Kb 98.45
S. sviceus ATCC 29083 8.37X (7.9X Q>20) 9.31 Mb 9.06 Mb 1 9.31 Mb 552 33.52 Kb 98.84
S. ghanaensis ATCC 14672 11.6X (10.8X Q>20) 8.51 Mb 8.22 Mb 3 8.27 Mb 616 24.17 Kb 99.06
S. roseosporus NRRL 15998 11.9X (11.4X Q>20) 7.82 Mb 7.56 Mb 1 7.82 Mb 371 38.58 Kb 99.17
S. albus J1074 14.3X (13.5X Q>20) 6.82 Mb 6.62 Mb 2 6.81 Mb 501 23.68 Kb 99.01
S. sp. AA4 10.9X (10.4X Q>20) 9.18 Mb 9.15 Mb 4 8.48 Mb 98 218.5 Kb 99.73
S. sp. C 8.17X (7.64X Q>20) 8.46 Mb 7.92 Mb 4 7.45 Mb 652 25.61 Kb 97.68
S. sp. SPB78 8.9X (8.3X Q>20) 7.56 Mb 6.9 Mb 4 7.52 Mb 694 20.68 Kb 97.53
S. griseoflavus Tu4000 8.7X (8.2X Q>20) 8.05 Mb 7.36 Mb 1 8.05 Mb 927 14.02 Kb 98.28
S. hygroscopicus ATCC 53653 6.11X (5.8X Q>20) 11.03 Mb 10.47 Mb 2 10.9 Mb 783 27.79 Kb 97.95
S. lividans TK24 12.66X (11.9X Q>20) 8.32 Mb 8.19 Mb 1 8.32 Mb 333 49.56 Kb 99.36
S. viridochromogenes DSM 40736 7.76X (7.4X Q>20) 8.65 Mb 8.55 Mb 1 8.65 Mb 226 82.09 Kb 98.88
S. sp. E14 8.61X (8.1X Q>20) 7.93 Mb 7.15 Mb 13 5.99 Mb 716 21.38 Kb 97.21
M. carbonacea ATCC 39149 7.83X (7.4X Q>20) 6.82 Mb 6.51 Mb 4 6.8 Mb 339 42.65 Kb 98.13
Micromonospora sp. M42 7.62X (9.12X Q>20) 6.78 Mb 6.61 Mb 14 6.7 Mb 288 59.94 Kb 99.00
Kutzneria sp. 744 7.36X (7.11X Q>20) 11.65 Mb 11.43 Mb 1 11.65 Mb 534 40.16 Kb 98.64
S. roseosporus NRRL 11379 (v4) -- 7.85 Mb 7.83 Mb 1 7.85 Mb 246 78.71 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome