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Sequence Downloads

supercontigs.fasta
contigs.fasta
contigs.agp
chromosomal.agp
All File Types
S. octosporus (SO6)
S. octosporus mito
S. japonicus yFS275 (SJ5)
S. japonicus mito
S. cryophilus (SCY4)
S. cryophilus mito
S. pombe
S. pombe mito
All Assemblies->

Gene Downloads

genes.fasta
transcripts.fasta
transcripts.gtf
proteins.fasta
proteins_stops.fasta
pfam_to_genes.txt
genes_upstream_1000.fasta
genes_upstream_utr_1000.fasta
genes_downstream_1000.fasta
genes_downstream_utr_1000.fasta
genome_summary.txt
genome_summary_per_gene.txt
All File Types
S. octosporus (SO6)
S. octosporus mito
S. japonicus yFS275 (SJ5)
S. japonicus mito
S. cryophilus (SCY4)
S. cryophilus mito
S. pombe
S. pombe mito
All Assemblies->

Supplementary Downloads

Syntenic blocks for the three schizosaccharomyces genomes. For each block, there is a fasta file (.mfa) of raw sequence, as well as a multiple alignment of the sequences (.aln). Please see alignment_catalog.csv for an index of these blocks and the corresponding genomic regions.

This file has been updated to include pairwise blocks between S. japonicus and S. octosporus.

116.6 MB 06/18/2009
Schizo 4-species MultiZ alignment in gzippe'd MAF format 10.2 MB 01/04/2012
S. pombe conservation track in WIG format 2.6 MB 03/21/2012

Illumina Sequence Data
S. pombe 132 896 bytes 01/22/2009
S_pombe_132.tar 1.5 GB 01/23/2009
S. kambucha 842 bytes 01/22/2009
S_kambucha.tar 1.9 GB 01/23/2009

Illumina Polymorphism Data

These polymorphisms were identified when comparing illumina data to published S. pombe reference 972.
README_polymorphism.txt 288 bytes 02/03/2009
spombe972h_vs_spombeSPK1820kambucha.csv 3.8 MB 02/24/2011
spombe972h_vs_spombe132.csv 4.5 MB 02/24/2011
spombe972h_vs_spombe972h.csv 13.5 KB 02/24/2011

Mapped genes from previous releases
SCY3_mapped_genes.nt 7.2 MB 09/27/2010
SJ1_mapped_genes.nt 6.9 MB 09/27/2010
SO3_mapped_genes.nt 7.2 MB 09/27/2010

GFF3 files for all protein coding genes and ncRNA genes
SCY3_CALLGENES_FINAL_2.gff3 3.4 MB 02/22/2011
SCY3_ncRNA.gff3 394.9 KB 02/22/2011
SJ4_CALLGENES_FINAL_2.gff3 2.7 MB 02/22/2011
SJ4_ncRNA.gff3 191.6 KB 02/22/2011
SO5_CALLGENES_FINAL_2.gff3 2.8 MB 02/22/2011
SO5_ncRNA.gff3 464.4 KB 02/22/2011
SP2_CALLGENES_FINAL_3.gff3 2.9 MB 03/31/2011
SP2_ncRNA.gff3 382.2 KB 03/31/2011

RNAseq FPKM tables
Scry_FPKM.xls 1.4 MB 05/16/2011
Sjap_FPKM.xls 1.4 MB 05/16/2011
Soct_FPKM.xls 1.6 MB 05/16/2011
Spom_FPKM.xls 1.6 MB 05/16/2011

RNAseq/Inchworm/PASA assembly sequences
SCY4_pasa.fas.gz 4.8 MB 10/02/2012
SJ5_pasa.fas.gz 5.3 MB 10/02/2012
SO6_pasa.fas.gz 5.7 MB 10/02/2012
SP2_pasa.fas.gz 5.7 MB 10/02/2012

Unplaced Read Downloads

schizosaccharomyces_japonicus_1_excluded_reads.fasta.gz 6.9 MB 09/09/2008
schizosaccharomyces_octosporus_2_excluded_reads.fasta.gz 4.0 MB 09/09/2008