Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
S. octosporus (SO6) N/A 11.63 Mb 11.26 Mb 5 3.86 Mb 18 1.78 Mb -
S. octosporus mito -- 44.23 Kb 44.23 Kb 1 44.23 Kb 1 44.23 Kb -
S. japonicus yFS275 (SJ5) -- 11.73 Mb 11.14 Mb 32 3.87 Mb 87 1.77 Mb 99.99
S. japonicus mito -- 80.06 Kb 80.06 Kb 1 80.06 Kb 1 80.06 Kb -
S. cryophilus (SCY4) -- 11.56 Mb 11.53 Mb 34 1.39 Mb 202 290.1 Kb 99.71
S. cryophilus mito -- 32.67 Kb 32.67 Kb 1 32.67 Kb 1 32.67 Kb -
S. pombe -- 12.57 Mb 12.57 Mb 3 4.54 Mb 3 4.54 Mb -
S. pombe mito -- 19.43 Kb 19.43 Kb 1 19.43 Kb 1 19.43 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome