Genetic, Physical, and Optical Maps

• Description of the optical mapping process

The Pyrenophora Optical Maps have been constructed using the restriction enzyme AflII A. The resulting maps correspond to 98X physical coverage and consists of 11 linkage maps. In silico restriction maps of Pyrenophora assembly were generated. The correspondences of the restriction enzyme cutting sites and the predicted fragment lengths have been used to order and orient the scaffolds of the Pyrenophora assembly to the optical map. This procedure mapped more than 96% of the assembled scaffolds, which corresponds to more than 90% of the optical map.

A poster-sized version of the physical-optical maps is available. Click on the image below to download it.

• Chromosome 1
• Chromosome 2
• Chromosome 3
• Chromosome 4
• Chromosome 5
• Chromosome 6
• Chromosome 7
• Chromosome 8
• Chromosome 9
• Chromosome 10
• Chromosome 11