News

12/3/2012    The release of RNAseq-based annotation of Puccinia striiformis PST-78

Strain Name Total Genes Accession Submission Date
P. striiformis PST-78 19,542 AJIL01000000 12/3/2012

The annotated release presents:

A full summary can be found here.

12/3/2012    The release of RNA-Seq updated gene set for Puccinia triticina 1-1 BBBD Race1

Strain Name Total Genes Accession Submission Date
P. triticina 1-1 BBBD Race1 14,880 ADAS02000000 12/3/2012

The annotated release presents:

A full summary can be found here.

12/3/2012    Initial release of our assembly of Puccinia striiformis PST-78

The assembled sequences for the following strain have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
P. striiformis PST-78 81X AJIL01000000 12/3/2012

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

2/3/2012    Updated release of our sequence assembly of P. triticina

Strain Name Coverage Accession Release Date
P. triticina 1-1 BBBD Race1 31.0x ADAS02000000 2/3/2012

This new assembly incorporates 454 FLX+ reads; gene calls are not yet available on this assembly.

This updated release allows:

  • BLAST searches against our 31X genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Feature Search of the features found in the genome assembly
  • Search and download a particular region of the genome assembly

12/16/2011    The release of RNAseq-based annotation of Puccinia graminis f. sp. tritici

Strain Name Total Genes Accession Submission Date
P. graminis f. sp. tritici
CRL 75-36-700-3
15,800 AAWC01000000 12/16/2011

7/9/2010    Release of finished mitochondrial assembly for P. triticina 1-1 BBBD Race 1 and its annotation data

The mitochondrial genome of P. triticina 1-1 BBBD Race 1 has been finished to a complete circle (cut after COX2). The total length of this assembly is 75,832 bp with 14 protein-coding genes. This assembly has been deposited at Genbank under the project accession ADAS01000000.

5/26/2010    Release of a Preliminary Gene set for P. triticina 1-1 BBBD Race1

Strain Name Total Genes Accession Submission Date
P. triticina 1-1 BBBD Race1 11,638 ADAS01000000 5/19/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

5/26/2010    Release of updated mitochondrial assembly for P. graminis and its annotation data

The previous assembly has been reverse-complemented so that coding genes are on the forward strand. The total length of this assembly is 79,448 bases in 6 contigs combined into one supercontig. This assembly has been deposited at Genbank under the project accession AAWC01000000.

1/7/2010    Release of mitochondrial assembly for P. triticina

This assembly has been deposited at Genbank under the project accession ADAS00000000. The total length of this assembly is 73,826 bases in 2 contigs combined into one supercontig.

1/7/2010    The initial release of our 16X sequence assembly of P. triticina

Strain Name Coverage Accession Submission Date
P. triticina 1-1 BBBD Race1 Draft ADAS01000000 1/7/2010

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ADAS00000000. The version described in this release is the first version, ADAS01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.

Important information about this release can be found here.

This initial release allows:

  • BLAST searches against our 16X genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Feature Search of the features found in the genome assembly
  • Search and download a particular region of the genome assembly

9/3/2009    Release of dubious gene calls

The annotation for P. graminis was reevaluated to remove transposons and poorly supported gene calls (2,326 total).

These dubious calls are noted on gene pages, and a list is available on the download page.

A multifasta file of protein set without these dubious calls is also provided on the download page.

7/13/2007    Release of the Results of Automated Annotation of P. graminis

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

NOTE: This gene set includes 6,859 short (<200 aa long) predicted genes with no EST or BlastX evidence.

1/19/2007    Release of mitochondrial assembly for P. graminis

This assembly has been deposited at Genbank under the project accession AAWC00000000. The total length of this assembly is 79,448 bases in 6 contigs combined into one supercontig.

1/12/2007    The initial release of our 7.88X sequence assembly of P. graminis

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAWC00000000. The version described in this paper is the first version, AAWC01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.

Important information about this release can be found here.

This initial release allows:

  • BLAST searches against our 7.88X genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Feature Search of the features found in the genome assembly
  • Search and download a particular region of the genome assembly