Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
P. graminis tritici 12x 88.64 Mb 81.52 Mb 392 964.97 Kb 4,557 39.5 Kb 96.33
P. graminis tritici mitochondrion -- 79.75 Kb 79.2 Kb 1 79.75 Kb 6 21.08 Kb 80.88
P. triticina 1-1 BBBD Race 1 (V2) 31x 135.34 Mb 106.57 Mb 14,820 544.26 Kb 24,838 10.37 Kb 99.10
P. triticina 1-1 BBBD Race 1 mito -- 75.83 Kb 75.83 Kb 1 75.83 Kb 1 75.83 Kb -
P. striiformis PST-78 81x 117.31 Mb 79.31 Mb 9,715 519 Kb 17,295 17.36 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome