News
4/20/2010 Release of our annotation of 2 strains of Plasmodium
The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:
Strain Name Accession Total Genes Submission Date P. falciparum IGH-CR14 ACBS01000000 5,041 4/20/2010 P. falciparum RAJ116 ACBR01000000 3,180 4/20/2010 This annotated release presents:
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers
- tRNA predictions
- RFam features
A full summary can be found here. Click here for a description of how the gene predictions were generated.
4/20/2010 Plasmodium gene sets updated
The gene sets for our Plasmodium genomes P. falciparum strains Dd2 and HB3, have been updated according to the latest NCBI guidelines.
This is a summary of the changes:
Genome Total Genes Unchanged Added Gene structure Changed Deleted Merged Split P. falciparum Dd2 5,487 4,998 303 4 4 67 45 P. falciparum HB3 5,643 5,472 115 6 2 24 5 For more information regarding the gene set changes, please refer to the 'PF_x_Changes_NewGeneCall_2010.csv' files in the supplementary downloads section at the bottom of the page.
3/19/2009 Release of our sequence assembly of 2 strains of Plasmodium falciparum
Strain Name Coverage Accession Submission Date Plasmodium falciparum IGH-CR14 10.19X (8.78X Q>20) ACBS01000000 3/19/2009 Plasmodium falciparum RAJ116 7.3X (5.97X Q>20) ACBR01000000 3/19/2009 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.
10/31/2007 Initial Release of nine P. falciparum sequence assemblies
These Whole Genome Shotgun projects have been deposited at DDBJ/EMBL/GenBank under the project accession XXXX00000000. The versions described in this release are the first versions, XXXX01000000.
Strain Name NCBI Accession Isolate 7G8 ABGZ01000000 Isolate D10 ABGX01000000 Isolate D6 ABGY01000000 Isolate FCC-2/Hainan ABGW01000000 Isolate K1 ABGV01000000 Isolate RO-33 ABGU01000000 Isolate Santa Lucia ABHA01000000 Isolate Senegal_V34.04 ABGT01000000 Isolate VS/1 ABGS01000000 The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assemblies
- Search and download a particular region of the genome assemblies
4/13/2007 P. falciparum Dd2 - Release of the results of automated annotation
This annotated release presents:
- A predicted protein gene set of 5,380 genes
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- In silico gene predictions by various gene callers
A full summary can be found here. Click here for a description of how the gene predictions were generated.
3/16/2007 P. falciparum HB3 - Release of the results of automated annotation
This annotated release presents:
- A predicted protein gene set of 5,623 genes
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- In silico gene predictions by various gene callers
A full summary can be found here. Click here for a description of how the gene predictions were generated.
8/18/2006 P. falciparum Dd2
The initial release of our 9.55 (7.13X Q>20)X sequence assembly of the Plasmodium falciparum Dd2 assembly. The sequences have been deposited at NCBI with accession number AASM01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.
Important information about this release can be found here.
This initial release allows:
- BLAST searches against our 9.55 (7.13X Q>20)X genome assembly
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly
- Precomputed results of BlastX and HMMer Analyses, Repeat features, tRNA and Rfam predictions
- Mapped features from P. falciparum 3D7 annotation
There will be a second upcoming release containing the annotation of predicted genes and other genomic features.
8/18/2006 P. falciparum HB3
The following features have been added to this release:
- Precomputed results of BlastX and HMMer Analyses, Repeat features, tRNA and Rfam predictions
- Mapped features from P. falciparum 3D7 annotation
5/3/2006
The sequences for the Plasmodium falciparum HB3 mitochondrion and apicoplast sequences have been posted, making them available for downloading and searching via BLAST. The mitochondrial and apicoplast genomes can be located under in GenBank Accession Numbers DQ642845 and DQ642846, respectively.
3/20/2006
We removed from the assembly a small set of contigs that were too short to be accepted at NCBI.
2/20/2006
The initial release of our 10.11 (8.07X Q>20)X sequence assembly of the Plasmodium falciparum HB3 assembly. The sequences have been deposited at NCBI with accession AANS01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.
Important information about this release can be found here.
This initial release allows:
- BLAST searches against our 10.11 (8.07X Q>20)X genome assembly
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly
There will be a second upcoming release containing the annotation of predicted genes and other genomic features.
 |