Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
P. falciparum Dd2 nucleus N/A 20.88 Mb 19.45 Mb 2,837 19.11 Kb 4,511 11.61 Kb 85.66
P. falciparum HB3 nucleus N/A 24.26 Mb 23.43 Mb 1,189 96.47 Kb 2,971 20.62 Kb 93.17
P. falciparum HB3 mitochondrion N/A 5.97 Kb 5.97 Kb 1 5.97 Kb 1 5.97 Kb -
P. falciparum HB3 apicoplast N/A 29.53 Kb 29.53 Kb 1 29.53 Kb 1 29.53 Kb 99.66
P. falciparum 7G8 nucleus N/A 14.28 Mb 13.38 Mb 4,843 3.83 Kb 8,845 1.77 Kb 71.00
P. falciparum D10 nucleus N/A 13.38 Mb 12.76 Mb 4,471 3.71 Kb 7,724 2 Kb 71.80
P. falciparum D6 nucleus N/A 13.22 Mb 12.67 Mb 5,011 3.23 Kb 8,394 1.68 Kb 71.62
P. falciparum FCC-2/Hainan nucleus N/A 12.96 Mb 12.18 Mb 4,956 3.3 Kb 8,543 1.61 Kb 69.39
P. falciparum RO-33 nucleus N/A 13.71 Mb 12.9 Mb 4,991 3.47 Kb 8,879 1.63 Kb 69.91
P. falciparum SL nucleus N/A 13.19 Mb 12.69 Mb 5,193 3.08 Kb 8,135 1.77 Kb 69.41
P. falciparum K1 nucleus N/A 13.29 Mb 12.82 Mb 4,772 3.42 Kb 7,553 2.06 Kb 73.30
P. falciparum Senegal_V34.04 nucleus N/A 13.24 Mb 12.83 Mb 4,329 3.76 Kb 6,840 2.31 Kb 76.22
P. falciparum VS/1 nucleus N/A 18.89 Mb 18.17 Mb 5,856 4.42 Kb 9,898 2.28 Kb 74.79
P. falciparum IGH-CR14 nucleus N/A 21.74 Mb 20.68 Mb 849 37.02 Kb 1,965 21.01 Kb 95.49
P. falciparum IGH-CR14 mitochondrion N/A 6.04 Kb 6.04 Kb 1 6.04 Kb 1 6.04 Kb 96.75
P. falciparum IGH-CR14 apicoplast N/A 31.6 Kb 29.12 Kb 3 22.57 Kb 4 19.85 Kb 93.92
P. falciparum RAJ116 nucleus -- 14.11 Mb 11.63 Mb 1,199 13 Kb 2,720 9.54 Kb 89.68
P. falciparum RAJ116 mitochondrion -- 5.99 Kb 5.99 Kb 1 5.99 Kb 1 5.99 Kb 98.98
P. falciparum RAJ116 apicoplast -- 36.79 Kb 30.21 Kb 3 24.75 Kb 6 9.96 Kb 91.51
P. falciparum 3D7 (PlasmoDB 6.1) -- 23.3 Mb 23.3 Mb 16 1.69 Mb 16 1.69 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome