Genome and Assembly Statistics

Genome Stats

Size %GC Genes tRNAs rRNAs
P. brasiliensis Pb01 32.94 Mb 42.82 9,132 118 29
P. brasiliensis Pb03 29.06 Mb 44.50 7,876 103 20
P. brasiliensis Pb18 29.95 Mb 44.36 8,741 103 32
P. brasiliensis Pb01 mitochondria 40.69 Kb 23.05 13 26 0
P. brasiliensis Pb03 mitochondria 75.25 Kb 20.97 17 32 0
P. brasiliensis Pb18 mitochondria 43.12 Kb 23.16 14 27 1

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
P. brasiliensis Pb01 8X (7.11X Q>20) 32.94 Mb 32.55 Mb 111 1.03 Mb 885 84.28 Kb 98.86
P. brasiliensis Pb03 8.9X (7.65X Q>20) 29.06 Mb 28.79 Mb 65 1.88 Mb 552 114.92 Kb 98.89
P. brasiliensis Pb18 9.8X (8.54X Q>20) 29.95 Mb 29.4 Mb 57 2.15 Mb 669 109.68 Kb 98.93
P. brasiliensis Pb01 mitochondria N/A 40.69 Kb 30.69 Kb 1 40.69 Kb 2 23.77 Kb -
P. brasiliensis Pb03 mitochondria N/A 75.25 Kb 73.92 Kb 1 75.25 Kb 7 15.07 Kb 99.68
P. brasiliensis Pb18 mitochondria -- 43.12 Kb 42.74 Kb 4 12.55 Kb 5 10.04 Kb 97.10

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)