News

12/4/2014    Genome Updates for Paracoccidioides

A new publication available today in PLOS Neglected Tropical Diseases describes our update of the assembly and annotation of three Paracoccidioides genomes.

12/4/2014    Release of our Pilon-updated assembly and annotation of 3 strains of Paracoccidioides

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Total Genes Accession
Paracoccidioides sp. 'lutzii' Pb01 148x 8,826 ABKH02000000
Paracoccidioides brasiliensis Pb03 150x 8,427 ABHV02000000
Paracoccidioides brasiliensis Pb18 9.8x 8,390 ABKI02000000

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

October 29, 2011    Paracoccidioides Genome Paper

Our paper "Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis" is available today in PLoS Genetics

6/17/2010    The updated release of our mitochondrial annotation of Paracoccidioides brasiliensis strains Pb01 and Pb03

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Genes Accession Submission Date
P. brasiliensis Pb01 mitochondrion 13 ABKH01000000 6/17/2010
P. brasiliensis Pb03 mitochondrion 17 ABHV01000000 6/17/2010

This annotated release presents:

A full summary can be found here.

6/17/2010    The updated release of our mitochondrial assemblies of Paracoccidioides brasiliensis strains Pb01 and Pb03

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
P. brasiliensis Pb01 mitochondrion N/A ABKH01000000 6/17/2010
P. brasiliensis Pb03 mitochondrion N/A ABHV01000000 6/17/2010

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

8/19/2009    Release of the results of Automated Mitochondrial Annotation on three strains of P. brasiliensis

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Genes Accession Submission Date
P. brasiliensis Pb01 19 ABKH00000000 8/19/2008
P. brasiliensis Pb03 13 ABHV00000000 8/19/2008
P. brasiliensis Pb18 14 ABKI00000000 8/19/2008

This annotated release presents:

A full summary can be found here.

6/25/2008    Release of the results of Automated Annotation on three strains of P. brasiliensis

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Genes Accession Submission Date
P. brasiliensis Pb01 9,132 ABKH00000000 6/25/2008
P. brasiliensis Pb03 7,875 ABHV00000000 6/25/2008
P. brasiliensis Pb18 8,741 ABKI00000000 6/25/2008

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

3/10/2008    The initial Release of Paracoccidioides brasiliensis strains Pb01 and Pb18 sequence assemblies

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
P. brasiliensis Pb01 7X ABKH00000000 2/26/2008
P. brasiliensis Pb18 8.5X ABKI00000000 2/26/2008

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

11/27/2007    The initial Release of Paracoccidioides brasiliensis Strain Pb03 sequence assembly

The assembled sequences for the following strain have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date
P. brasiliensis Pb03 8.91X ABHV01000000 11/26/07

This release allows:

  • BLAST searches against our 8.91X (7.65X Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly