Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
P. brasiliensis Pb01 8X (7.11X Q>20) 32.94 Mb 32.55 Mb 111 1.03 Mb 885 84.28 Kb 98.86
P. brasiliensis Pb03 8.9X (7.65X Q>20) 29.06 Mb 28.79 Mb 65 1.88 Mb 552 114.92 Kb 98.89
P. brasiliensis Pb18 9.8X (8.54X Q>20) 29.95 Mb 29.4 Mb 57 2.15 Mb 669 109.68 Kb 98.93
P. brasiliensis Pb01 mitochondria N/A 40.69 Kb 30.69 Kb 1 40.69 Kb 2 23.77 Kb -
P. brasiliensis Pb03 mitochondria N/A 75.25 Kb 73.92 Kb 1 75.25 Kb 7 15.07 Kb 99.68
P. brasiliensis Pb18 mitochondria -- 43.12 Kb 42.74 Kb 4 12.55 Kb 5 10.04 Kb 97.10

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome