Home > Data Neurospora crassa > Gene Index

Gene Index

• Description
  Information on how this putative gene set was created
  

• Search for genes
  Search database of all Neurospora crassa genes by name, locus, position, or PFAM domain
  

• BLAST against protein set
  Use BlastX or BlastP or search against the set of predicted proteins of all Neurospora crassa genes by name, locus, position, or PFAM domain
  

• Download FASTA files and supplementary material
  FASTA files for genome sequence, genes, translated proteins are available.

• Genes by PFAM domain
  Genes categorized by HMMER hit to a PFAM protein domain
  

• Genes for Functional RNA by RFAM family
  Features categorized by INFERNAL hit to an RFAM family
  

• Do Gene Enrichment on list of specified genes
  Enter a list of search criteria (gene loci, symbols or names) and perform gene enrichment on the resulting genes.

• Genome Statistics
  View basic statistics about genome size, gene density, coding regions, exon/intron sizes, codon usage, etc.

• Browse genes by category based on functional ontologies:
  • NcCyc Reactions
  • NcCyc Pathways
  • Gene Ontology