Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
M. tuberculosis F11 Finished 4.42 Mb 4.42 Mb 1 4.42 Mb 1 4.42 Mb -
M. tuberculosis Haarlem Finished 4.41 Mb 4.41 Mb 1 4.41 Mb 1 4.41 Mb -
M. tuberculosis KZN 4207 (DS) Finished 4.39 Mb 4.39 Mb 1 4.39 Mb 1 4.39 Mb -
M. tuberculosis KZN 1435 (MDR) Finished 4.4 Mb 4.4 Mb 1 4.4 Mb 1 4.4 Mb -
M. tuberculosis KZN 605 (XDR) Finished 4.4 Mb 4.4 Mb 1 4.4 Mb 1 4.4 Mb -
M. tuberculosis C 6.7X 4.38 Mb 4.28 Mb 4 3.04 Mb 160 47.42 Kb 97.01
M. tub. 98-R604 INH-RIF-EM 6.9X 4.34 Mb 4.29 Mb 16 357.11 Kb 136 85.34 Kb 98.58
M. tuberculosis W-148 8X 4.54 Mb 4.42 Mb 1 4.54 Mb 115 180.48 Kb 99.01

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome