News

7/12/2013    The release of our RNAseq-based annotation for Fonticula alba (V2)

Strain Name Total Genes Accession Submission Date
F. alba ATCC 38817 (V2) 5,881 AROH01000000 7/12/2013
F. alba ATCC 38817 (mitochondrion) 20 AROH01000000 7/12/2013

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

7/12/2013    The release of our updated RNAseq-based annotation for Capsaspora owczarzaki ATCC 30864

Strain Name Total Genes Accession Submission Date
C. owczarzaki ATCC 30864 8,758 ACFS02000000 7/12/2013

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

5/31/2013    TSA release for Amoebidium parasiticum JAP-7-2

The strand-specific and paired RNAseq read data was generated using Illumina technology, and assembled using Trinity assembler.

This Transcriptome Shotgun Assembly project has been deposited at DDBJ/EMBL/GenBank under the accession GAKF00000000.

4/23/2013    The release of the updated assembly of Fonticula alba (V2)

We have fixed a few contigs with contamination and created the Fonticula alba V2 assembly. The updated assembly has been submitted to GenBank.
Strain Name Coverage Accession Submission Date
F. alba ATCC 38817 (V2)
(mitochondrial sequence included)
317X AROH01000000 4/23/2013

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

3/29/2013    The initial release of our assembly of Fonticula alba (V1)

Strain Name Coverage Accession Submission Date
F. alba ATCC 38817 (V1)
(mitochondrial sequence included)
317X AROH01000000 3/29/2013

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

3/1/2012    The release of RNAseq-based annotation of Spizellomyces punctatus DAOM BR117 and Allomyces macrogynus ATCC 38327

Strain Name Total Genes Accession Submission Date
S. punctatus DAOM BR117 8,952 ACOE01000000 3/1/2012
A. macrogynus ATCC 38327 18,773 ACDU01000000 3/1/2012

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

12/16/2011    The release of RNAseq-based annotation of Mortierella verticillata NRRL 6337

Strain Name Total Genes Accession Submission Date
M. verticillata NRRL 6337 12,457 AEVJ01000000 12/16/2011
M. verticillata NRRL 6337
mitochondrion
26 AEVJ01000000 12/16/2011

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

10/28/2011    The release of RNAseq-based annotation of Thecamonas trahens (formerly known as Amastigomonas spp) ATCC50062

Strain Name Total Genes Accession Submission Date
Thecamonas trahens ATCC_50062 10,544 ADVD01000000 10/28/2011

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

7/26/2011    The initial release of RNAseq-based annotation of Sphaeroforma arctica JP610

Strain Name Total Genes Accession Submission Date
Sphaeroforma arctica JP610 18,319 AEOD01000000 7/26/2011

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

2/17/2011    The release of RNA-Seq updated gene set for Capsaspora owczarzaki ATCC 30864 and Salpingoeca rosetta

Strain Name Total Genes Accession Submission Date
Capsaspora owczarzaki ATCC 30864 8,657 ACFS02000000 2/17/2010
Salpingoeca rosetta 11,629 ACSY01000000 2/17/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

2/17/2011    The updated release of our assembly of Capsaspora owczarzaki

Strain Name Coverage Accession Submission Date
C. owczarzaki ATCC_30864 10.6X ACFS02000000 2/17/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

2/17/2011    The initial release of our assembly of Mortierella verticillata NRRL 6337

Strain Name Coverage Accession Submission Date
M. verticillata NRRL 6337
(Mitochondrial sequence included)
225X AEVJ01000000 2/17/2011

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

1/26/2011    The initial release of our assembly of Sphaeroforma arctica

Strain Name Coverage Accession Submission Date
S. arctica JP610 37X AEOD01000000 1/26/2011

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

11/19/2010    The updated release of our annotation of Salpingoeca rosetta (formerly known as Proterospongia sp. ATCC 50818)

Strain Name Total Genes Accession Submission Date
Salpingoeca rosetta 11,597 ACSY01000000 11/19/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

8/12/2010    The initial release of our annotation of Thecamonas trahens (formerly known as Amastigomonas spp) ATCC50062

Strain Name Total Genes Accession Submission Date
Thecamonas trahens ATCC_50062 11,582 ADVD01000000 8/12/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

6/22/2010    Proterospongia sp. ATCC 50818 changed to Salpingoeca rosetta

The name of the organism Proterospongia sp. ATCC 50818 has been changed to Salpingoeca rosetta and the strain description has been updated here.

6/14/2010    Amastigomonas sp. ATCC 50062 changed to Thecamonas trahens ATCC 50062

The name of the organism Amastigomonas sp. ATCC 50062 has been changed to Thecamonas trahens ATCC 50062 and the strain description has been updated here.

5/26/2010    The initial release of our assembly of Amastigomonas spp ATCC50062

Strain Name Coverage Accession Submission Date
Amastigomonas spp ATCC_50062 32.87X ADVD01000000 5/26/2010

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

1/15/2010    The release of our annotation of 2 strains

Strain Name Total Genes Accession Submission Date
A. macrogynus ATCC_38327 17,600 ACDU01000000 1/15/2010
Proterospongia sp. ATCC_50818 11,524 ACSY01000000 1/15/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

8/14/2009    The release of our annotation of 2 strains

Strain Name Total Genes Accession Submission Date
C. owczarzaki ATCC_30864 8,381 ACFS01000000 8/14/2009
S. punctatus DAOM_BR117 8,804 ACOE01000000 8/14/2009

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

8/14/2009    The initial release of our assemblies of 2 strains

Strain Name Coverage Accession Submission Date
S. punctatus DAOM_BR117 9.38X (8.40X Q>20) ACOE01000000 8/14/2009
Proterospongia sp. ATCC_50818 33.07X ACSY01000000 8/14/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

5/27/2009    The initial release of our assembly of Capsaspora owczarzaki

Strain Name Coverage Accession Submission Date
C. owczarzaki ATCC_30864 10.6X (9.3X Q>20) ACFS01000000 5/27/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

5/27/2009    The initial release of our assembly of Allomyces macrogynus

Strain Name Coverage Accession Submission Date
A. macrogynus ATCC_38327 7.31X (6.05 Q>20) ACDU01000000 5/27/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.