Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
A. macrogynus ATCC 38327 7.31x (ABI) 57.06 Mb 52.62 Mb 101 1.11 Mb 8,973 35.5 Kb 93.77
A. macrogynus ATCC 38327 mitochondrion -- 57.47 Kb 57.47 Kb 1 57.47 Kb 1 57.47 Kb -
C. owczarzaki ATCC 30864 10.6x (ABI) 27.97 Mb 27.43 Mb 84 1.62 Mb 625 128.92 Kb 99.19
C. owczarzaki ATCC 30864 mitochondrion -- 196.97 Kb 196.97 Kb 3 152.5 Kb 3 152.5 Kb -
S. punctatus DAOM BR117 11.7x (ABI) 24.13 Mb 23.91 Mb 38 1.47 Mb 329 155.89 Kb 99.60
S. punctatus DAOM BR117 mitochondrion -- 61.35 Kb 61.35 Kb 3 58.83 Kb 3 58.83 Kb -
S. rosetta 33.07x (454/ABI) 55.44 Mb 51.7 Mb 154 1.52 Mb 3,086 34.76 Kb 98.51
T. trahens ATCC 50062 32.87x (454/ABI) 28.68 Mb 27.86 Mb 131 436.28 Kb 1,650 29.08 Kb 99.29
S. arctica JP610 37.0x (454) 121.59 Mb 97.51 Mb 15,618 64.6 Kb 25,760 7.12 Kb 99.30
S. arctica JP610 mitochondrion -- 43.12 Kb 30.11 Kb 1 43.12 Kb 14 2.85 Kb 99.83
M. verticillata NRRL 6337 225x (Illumina/Sanger) 41.85 Mb 40.82 Mb 55 2.91 Mb 700 100.24 Kb 99.42
M. verticillata mitochondrion -- 58.75 Kb 58.75 Kb 1 58.75 Kb 1 58.75 Kb -
M. brevicollis MX1 -- 41.63 Mb 38.65 Mb 218 1.07 Mb 2,143 49.87 Kb -
F. alba ATCC 38817 (V2) 317x (Illumina) 31.22 Mb 25.33 Mb 210 2.53 Mb 5,693 7.56 Kb -
F. alba ATCC 38817 mito (V2) 63x (Illumina) 79.84 Kb 77.6 Kb 4 45.19 Kb 5 17.98 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome