News

3/24/2010    The updated release of our Finished assembly and annotation of 2 strains of Listeria monocytogenes

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Accession Total Genes Submission Date
L. monocytogenes J0161 AARW03000000 2,973 03/24/2010
L. monocytogenes 10403S AARZ03000000 2,828 03/24/2010

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

2/22/2010    The updated release of our assembly and annotation of 2 strains of Listeria monocytogenes

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Accession Total Genes Submission Date
L. monocytogenes FSL J2-071 AARN04000000 2,822 02/19/2010
L. monocytogenes FSL N1-017 AARP04000000 3,187 02/19/2010

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

2/22/2010    Correction of FSL J2-071 and FSL N1-017 labels

The names for Listeria monocytogenes genomes for strains FSL J2-071 and FSL N1-017 were incorrect in the previous release. They have been re-released with correct labels and the updated assembly and annotation data has been submitted to NCBI.

7/9/2009    The updated release of our Finished assembly and annotation of 2 strains of Listeria monocytogenes

Strain Name Accession Total Genes Submission Date
L. monocytogenes FSL R2-561 AARS02000000 2,910 7/9/2009
L. monocytogenes Finland 1998 AART02000000 2,762 7/9/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

2/10/2009    Release of our annotation of 7 strains of Listeria monocytogenes

Strain Name Total Genes Accession Submission Date
Listeria monocytogenes HPB2262 3,053 AATL02000000 2/10/2009
Listeria monocytogenes F6900 3,005 AARU02000000 2/10/2009
Listeria monocytogenes FSL J1-194 3,013 AARJ02000000 2/10/2009
Listeria monocytogenes FSL J2-071 3,239 AARN02000000 2/10/2009
Listeria monocytogenes FSL N1-017 2,861 AARP02000000 2/10/2009
Listeria monocytogenes FSL N3-165 2,890 AARQ02000000 2/10/2009
Listeria monocytogenes FSL R2-503 3,027 AARR02000000 2/10/2009

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

9/29/2008    The updated release of our assemblies of 18 strains and annotation of 5 strains of Listeria monocytogenes

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date No of Genes Annotation Submission Date
L. monocytogenes J0161 29.15X AARW02000000 9/29/08 3,282 9/29/08
L. monocytogenes 10403S 48.23X AARZ02000000 9/29/08 3,137 9/29/08
L. monocytogenes Finland 1998 48.23X AART01000000 9/29/08 2,920 9/29/08
L. monocytogenes FSL R2-561 48.23X AARS01000000 9/29/08 2,888 9/29/08
L. monocytogenes J2818 24x AARX02000000 9/29/08 3,084 9/29/08
L. monocytogenes FSL J1-194 22x AARJ02000000 9/29/08
L. monocytogenes FSL R2-503 35x AARR02000000 9/29/08
L. monocytogenes HPB2262 20x AATL02000000 9/29/08
L. monocytogenes FSL N1-017 22x AARP02000000 9/29/08
L. monocytogenes FSL J2-071 21x AARN02000000 9/29/08
L. monocytogenes FSL N3-165 22x AARQ02000000 9/29/08
L. monocytogenes F6900 26x AARU02000000 9/29/08
L. monocytogenes LO28 9x AARY02000000 9/29/08
L. monocytogenes FSL J2-003 8x AARM02000000 9/29/08
L. monocytogenes FSL J1-175 9x AARK02000000 9/29/08
L. monocytogenes FSL F2-515 5x AARI02000000 9/29/08
L. monocytogenes FSL J2-064 9x AARO02000000 9/29/08
L. monocytogenes FSL J1-208 5x AARL020000000 9/29/08

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.

2/21/2007    Release of annotations for L. monocytogenes strains J2818, HPB2262, FSL N1-017, N3-165 and F6900

The annotations for L. monocytogenes strains J2818, HPB2262, FSL N1-017, N3-165 and F6900 were generated through our automated pipeline.

1/19/2007    Release of annotations for L. monocytogenes strains 10403S and J0161

The annotations for L. monocytogenes strains 10403S and J0161 were generated through our automated pipeline. They contain 2852 and 2988 ORFs respectively.

11/28/2006    Correction of FSL J2-071 and FSL N1-017 labels

The names for Listeria monocytogenes genomes for strains FSL J2-071 and FSL N1-017 were incorrect in the first release. They have been re-released with correct labels.

11/3/2006    Aureli 1997 Strain designation changed to HPB2262

The strain formerly referred to as Aureli 1997 is now designated as HPB2262.

9/27/2006    The initial release of our assemblies of 16 strains of Listeria monocytogenes

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Submission Date No of Genes Annotation Submission Date
L. monocytogenes J0161 29.15X AARW01000000 8/18/06 2987 2/14/07
L. monocytogenes 10403S 48.23X AARZ01000000 8/18/06 2852 2/14/07
L. monocytogenes FSL J1-194 22x AARJ01000000 9/27/06
L. monocytogenes FSL R2-503 35x AARR01000000 9/27/06
L. monocytogenes J2818 24x AARX01000000 9/27/06 2982 2/14/07
L. monocytogenes HPB2262 20x AATL01000000 9/27/06 3008 2/14/07
L. monocytogenes FSL N1-017 22x AARP02000000 11/20/06 3016 2/14/07
L. monocytogenes FSL J2-071 21x AARN02000000 11/20/06
L. monocytogenes FSL N3-165 22x AARQ01000000 9/27/06 2853 2/14/07
L. monocytogenes F6900 26x AARU01000000 9/27/06 2962 2/14/07
L. monocytogenes LO28 9x AARY01000000 9/27/06
L. monocytogenes FSL J2-003 8x AARM01000000 9/27/06
L. monocytogenes FSL J1-175 9x AARK01000000 9/27/06
L. monocytogenes FSL F2-515 5x AARI01000000 9/27/06
L. monocytogenes FSL J2-064 9x AARO01000000 9/27/06
L. monocytogenes FSL J1-208 5x AARL01000000 9/27/06

The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.