Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
L. monocytogenes HPB2262 N/A 2.99 Mb 2.99 Mb 79 142.92 Kb 79 142.92 Kb -
L. monocytogenes F6900 N/A 2.97 Mb 2.97 Mb 23 524.16 Kb 23 524.16 Kb -
L. monocytogenes FSL J1-194 N/A 2.99 Mb 2.99 Mb 30 354.28 Kb 30 354.28 Kb 99.75
L. monocytogenes J2818 N/A 2.97 Mb 2.97 Mb 24 488.93 Kb 24 488.93 Kb -
L. monocytogenes FSL N3-165 N/A 2.88 Mb 2.88 Mb 39 146.7 Kb 39 146.7 Kb -
L. monocytogenes FSL R2-503 N/A 2.99 Mb 2.99 Mb 55 172.66 Kb 55 172.66 Kb 99.46
L. monocytogenes FSL J1-175 N/A 2.87 Mb 2.87 Mb 457 9.54 Kb 457 9.54 Kb 97.62
L. monocytogenes FSL J2-003 N/A 2.74 Mb 2.74 Mb 795 5.28 Kb 795 5.28 Kb -
L. monocytogenes FSL F2-515 N/A 1.82 Mb 1.82 Mb 1,728 1.14 Kb 1,728 1.14 Kb 89.14
L. monocytogenes LO28 N/A 2.68 Mb 2.68 Mb 1,150 3.18 Kb 1,150 3.18 Kb -
L. monocytogenes FSL J1-208 N/A 1.96 Mb 1.96 Mb 1,660 1.32 Kb 1,660 1.32 Kb -
L. monocytogenes FSL J2-064 N/A 2.83 Mb 2.83 Mb 545 8.16 Kb 545 8.16 Kb -
L. monocytogenes FSL R2-561 N/A 2.97 Mb 2.97 Mb 1 2.97 Mb 1 2.97 Mb -
L. monocytogenes Finland 1998 N/A 2.87 Mb 2.87 Mb 1 2.87 Mb 1 2.87 Mb -
L. monocytogenes FSL N1-017 N/A 3.14 Mb 3.14 Mb 79 92.14 Kb 79 92.14 Kb 99.52
L. monocytogenes FSL J2-071 N/A 2.85 Mb 2.85 Mb 53 102.73 Kb 53 102.73 Kb 99.16
L. monocytogenes J0161 N/A 3 Mb 3 Mb 1 3 Mb 1 3 Mb -
L. monocytogenes 10403S -- 2.9 Mb 2.9 Mb 1 2.9 Mb 1 2.9 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome