Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
H. capsulatum NAm1 7X 32.99 Mb 30.61 Mb 275 2.89 Mb 2,867 27.35 Kb 89.97
H. capsulatum NAm1 mitochondria N/A 41.85 Kb 41.7 Kb 5 14.56 Kb 6 11.93 Kb 97.17
H. capsulatum G186AR 11.5X (10X Q>20) 30.44 Mb 30.24 Mb 86 1.77 Mb 355 191.72 Kb 99.01
H. capsulatum G186AR mitochondria N/A 44.45 Kb 43.89 Kb 2 40.2 Kb 4 40.2 Kb 95.09
H. capsulatum H143 3.82X (3.53X Q>20) 38.92 Mb 36.14 Mb 48 1.74 Mb 4,265 15.86 Kb 88.63
H. capsulatum H143 mitochondria N/A 39.13 Kb 37.97 Kb 1 39.13 Kb 2 27.18 Kb 95.05
H. capsulatum H88 7.77X (7X Q>20) 37.9 Mb 37.65 Mb 16 5 Mb 462 168.19 Kb 98.68
H. capsulatum H88 mitochondria -- 39.36 Kb 38.77 Kb 1 39.36 Kb 2 27.69 Kb 97.28

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome