Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
Fusobacterium sp. 3_1_5R 37.33x 1.93 Mb 1.85 Mb 28 965.54 Kb 99 44.07 Kb 99.90
Fusobact. sp. 1_1_41FAA 36.43x 2.48 Mb 2.45 Mb 31 852.33 Kb 80 96.41 Kb 99.68
Fusobact. sp. 11_3_2 31x 2.72 Mb 2.7 Mb 37 336.96 Kb 81 101.81 Kb 99.43
Fuso. sp. 2_1_31 (v2) 25x 2.48 Mb 2.47 Mb 6 808.66 Kb 61 73.1 Kb 99.67
Fusobacterium sp. 4_1_13 (v2) 40.79x 2.27 Mb 2.27 Mb 7 733.89 Kb 24 556.29 Kb 99.89
Fusobacterium sp. D11 17.22x 2.45 Mb 2.34 Mb 76 109.5 Kb 355 11.48 Kb 98.88
Fusobacterium sp. D12 (v2) 15x 1.96 Mb 1.95 Mb 17 174.98 Kb 118 48.57 Kb 99.05
F. mortiferum ATCC 9817 (v2) 33x 2.67 Mb 2.67 Mb 8 754.93 Kb 44 128.6 Kb 99.80
F. varium ATCC 27725 (v2) 23x 3.3 Mb 3.3 Mb 11 496.14 Kb 39 150.31 Kb 99.77
F. ulcerans ATCC 49185 (v2) 33.83x 3.49 Mb 3.48 Mb 8 1.05 Mb 49 157.31 Kb 99.78
F. gonidiaf. ATCC 25563 (v2) 35.82x 1.7 Mb 1.7 Mb 6 376.92 Kb 24 101.5 Kb 99.83
F. necrophorum 1_1_36S 35x 2.31 Mb 2.3 Mb 15 743.67 Kb 40 130.13 Kb 97.77
F. nucleatum F0419 339x 2.42 Mb 2.41 Mb 4 2.42 Mb 39 146.58 Kb -
F. periodonticum D10 -- 2.57 Mb 2.43 Mb 150 59.75 Kb 429 10.24 Kb 99.03
Fuso. sp. 3_1_33 N/A 2.3 Mb 2.29 Mb 5 1.31 Mb 18 266.62 Kb -
F. nucleatum F0401 (v2) N/A 2.51 Mb 2.51 Mb 2 2.51 Mb 2 2.51 Mb -
F. ulcerans 12_1B (v2) N/A 3.73 Mb 3.68 Mb 8 660 Kb 38 173.43 Kb -
Fuso. sp. 21_1A (v3) N/A 2.15 Mb 2.15 Mb 1 2.15 Mb 2 1.76 Mb -
Fuso. sp. 3_1_27 (v2) N/A 2.17 Mb 2.17 Mb 2 1.8 Mb 2 1.8 Mb -
Fuso. sp. 3_1_27 plasmid N/A 15.92 Kb 15.92 Kb 1 15.92 Kb 1 15.92 Kb -
Fuso. sp. 3_1_36A2 (v2) N/A 2.27 Mb 2.27 Mb 1 2.27 Mb 1 2.27 Mb -
Fuso. sp. 4_8 (V2) N/A 2.26 Mb 2.26 Mb 1 2.26 Mb 1 2.26 Mb -
Fuso. sp. 4_8 plasmid N/A 14.19 Kb 14.19 Kb 1 14.19 Kb 1 14.19 Kb -
Fuso. sp. 7_1 (v2) N/A 2.51 Mb 2.51 Mb 1 2.51 Mb 1 2.51 Mb -
Fuso. sp. 7_1 plasmid -- 6.31 Kb 6.31 Kb 1 6.31 Kb 1 6.31 Kb -
F. nucleatum ATCC 25586 (GB) -- 2.17 Mb 2.17 Mb 1 2.17 Mb 1 2.17 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome