Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
F. verticillioides 7600 8X 41.78 Mb 41.7 Mb 36 1.96 Mb 210 392.4 Kb 99.49
F. verticillioides mito -- 93.92 Kb 93.92 Kb 3 48.71 Kb 3 48.71 Kb 98.52
F. graminearum PH-1 10X 36.45 Mb 36.22 Mb 31 5.35 Mb 433 184.59 Kb 99.25
F. graminearum mito -- 107.73 Kb 107.73 Kb 2 57.43 Kb 2 57.43 Kb 99.41
F. oxysporum 4287 6X 61.36 Mb 59.94 Mb 114 1.98 Mb 1,362 95.42 Kb 97.28
F. oxysporum mito -- 84.76 Kb 74.47 Kb 3 44.09 Kb 9 15.65 Kb 95.27
F. oxysporum Fo47 195X 49.66 Mb 49.44 Mb 124 3.84 Mb 419 762.15 Kb -
F. oxysporum FOSC 3-a 138X 47.91 Mb 47.21 Mb 168 4.46 Mb 545 538.88 Kb -
F. oxysporum HDV247 242x 55.19 Mb 54.53 Mb 472 2.84 Mb 1,744 230.51 Kb -
F. oxysporum MN25 210x 48.64 Mb 48.47 Mb 388 2.09 Mb 801 435.13 Kb -
F. oxysporum CL57 188x 49.36 Mb 49.26 Mb 418 2.47 Mb 725 554.9 Kb -
F. oxysporum Cotton 165x 52.91 Mb 52.46 Mb 985 423.97 Kb 1,947 150.34 Kb -
F. oxysporum II5 206x 46.55 Mb 46.43 Mb 418 1.13 Mb 716 348.59 Kb -
F. oxysporum melonis 157x 54.03 Mb 53.79 Mb 1,146 2.21 Mb 1,825 429.96 Kb -
F. oxysporum PHW808 124x 53.58 Mb 53.2 Mb 2,552 161.29 Kb 3,350 91.33 Kb -
F. oxysporum PHW815 145x 53.5 Mb 52.9 Mb 1,218 449.38 Kb 2,323 120.87 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid
F. verticillioides 7600 232,374 (4 kb); 218,474 (10 kb) 74,496 (40 kb)
F. graminearum PH-1 577,271 (4kb); 0 (10 kb) 90,636 (40 kb)
F. oxysporum 4287 100,045 547,105
F. oxysporum mito -- --

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome