/* SMALL TYPE SIZE for subheads, body text, nav items, etc */
/* use keywords to set some default sizes (approx 13px), then base other sizes off this as a percentage */
body, h2, h3, h4, p, li, td, th, div, blockquote, #leftnav, #footer, select, input {
	font-family: Verdana, Arial, Helvetica, sans-serif;
	font-size:    small;			
	}
html>body, html>h3 {
    font-size:    small; 			/* be nice to Opera */
}

#content li, p, h2, h4, td, th, #subnav {
	font-size:85%;
	line-height:1.5em;
	margin-right:20px;
	padding-left:5px;
}
#content li p, #content li li , td, th {font-size: 1em;}
	
body {
margin: 0;
padding: 0;
background-color: #ffffff;
}

a 			{ text-decoration: none; color: #039; }
a:link 		{ text-decoration: none; color: #039; }
a:visited 	{ text-decoration: none; color: #039; }
a:hover 	{ text-decoration: underline; }

h1, h5.csc-firstHeader {

	font-weight: normal;
	font-family: Verdana, Arial, Helvetica, sans-serif;

    font-size:    x-large;			/* intended value for better browsers */
	}
	html>h1 {
    font-size:    x-large; 			/* be nice to Opera */
}

h1, h5.csc-firstHeader  {
	margin-top: 0;
	margin-bottom: 0.5em;
	padding-left: 5px;
	line-height: 1em;
	color: #777;
	background-image: url(img/blue-bar.gif);
	background-repeat: no-repeat;
	background-position: left bottom;
}

h5.csc-firstHeader { background-image: none; }
.csc-firstHeader {
	padding-top: 0px;
	padding-bottom: 1em;
}

#content h2, #FGIcontent h2 {
	font-weight: bold;
	color: #333;
	padding: 0 5px;
	background-color: #E6EDF5;
	margin-top: 26px;
}

#content h2.lg {
	font-weight: bold;
	font-size: 100%;
	color: #333;
	padding: 0 5px;
	background-color: #E6EDF5;
	margin-top: 16px;
}

h2.nobg {
	background-color: #ffffff;
}


.homepage h2 {
	font-size: 100%;
	font-weight: bold;
	color: #333;
	background: transparent;
	
}

#content h3 {
	line-height: 1.3em;
}

h3, strong, b {
	font-weight: bold;
	color: #333;
	margin-bottom: 0;
}

hr { 	
	color: #fff;
	background-color: #fff;
	padding-left: 5px; 
	padding-right: 5px; 
	margin-right: 10px;
	border: none;
	border-top: 1px dashed #aaa;
	}


/*TOP AREA PAGE STYLES */

 #toplogo {
height: 65px;
}


.toplogo img {
border: none;
position: absolute;
top: auto;
left: auto;
}


#breadcrumbs {
	border-top: 5px solid #427BB5;
	background-color: #efefef;
	color: #666;
	line-height: 2em;
	padding-left: 15px;
	margin: 0;
	font-size: 80%;
}


/*FORMS */
input {
	border: 1px solid #999; 
	margin-right: 2px; 
	color: #000; 
	font-size: 85%;
	padding: 2px;
	z-index: 1;
}

button {
	border: 1px solid #999; 
	margin-right: 2px; 
	color: #000; 
	vertical-align: top;
	font-size: 85%;
	padding: 2px;
}

select {
	/*border: 1px solid #999; */
	color: #000;
	vertical-align: top;
	font-size: 85%;
	background-color: #F8EDCC;
	margin-bottom: 8px;
	z-index: 1;
}

input.search {
	background-color: #efefef;
}

input.text {
	background-color: #F8EDCC;
}


/*LEFT NAVIGATION STYLES */

#nav {
position: absolute;
top: 67px;
left: 0px;
width: 169px;
margin: 0;
padding: 0;
}

#nav, #left{
	border-top: 1px solid #bbb;
	border-right: 1px solid #bbb;
	background-color: #dfdfdf;
}

#nav h2 {
	margin: 0px;
	display: block;
	background-color: #bbb;
	color: #990000;
	border-bottom: 1px solid #bbb;
	padding-left: 8px;
	font-style: italic;
	padding-top: 0.4em;
	padding-right: 0px;
	padding-bottom: 0.4em;
	font-weight: bold;
}
#nav h3, #menuSearchBox h3 {
	margin: 0;
	padding-left: 8px;
	font-weight: bold;
	padding-top: 0.6em;
	padding-bottom: 0.4em;
	font-size: 85%;
	color: #666;
}

#nav ul {
	list-style: none;
	margin: 0px;
	padding: 0px;
}

#nav ul li {
	display: inline;
	margin: 0px;
	padding-left: 0px;
	padding-top: 0px;
	padding-right: 0px;
	padding-bottom: 0px;
}

#nav ul li a {
	margin: 0px;
	display: block;
	background-color: #FFFFFF;
	font-size: 85%;
	line-height: 1.2em;
	color: #333;
	border-bottom: 1px solid #bbb;
	padding-top: 0.5em;
	padding-right: 0px;
	padding-bottom: 0.5em;
	padding-left: 15px;
}

#nav ul li a:hover {
	background: #94A5C6;
	color: #fff;
	text-decoration: none;
}


#nav ul li a.on {
	background-color: #427BB5;
	color: #fff;
}


#nav .search {
	border-bottom: 1px solid #bbb;
}



#nav ul li.sub {
	background-color: #80abd7;
	padding-top: 5px;
	padding-right: 5px;
	padding-bottom: 15px;
	padding-left: 10px;
	border-bottom: 1px solid #bbb;
	margin: 0px;
	display: list-item;
	}

#nav ul li.sub {
	background-color: #80abd7;
	margin: 0px;
	padding: 0px;
}

#nav ul li.sub a {
	font-size: 85%;
	line-height: 1.2em;
	color: #003366;
	background-color: #80abd7;
	border-bottom: 0px solid #bbb;
	list-style: none;
	background: url(img/navbullet.gif) no-repeat 5px 0.5em;
	padding-left: 20px;
	padding-top: 2px;
	padding-right: 0px;
	padding-bottom: 2px;
	margin: 0px;
}

#nav ul li.sub a:hover {
	color: #c3dffb;
	text-decoration: none;
	background-color: #80abd7;
	list-style: none;
	background: url(img/navbullet-over.gif) no-repeat 5px 0.5em;	
}


#nav ul li.sub a.on {
	color: #fff;
	background-color: #80abd7;
	list-style: none;
	background: url(img/navbullet-on.gif) no-repeat 5px 0.5em;
}

#nav ul li.sub ul{
	background-color: #80abd7;
	padding-top: 0px;
	padding-right: 0px;
	padding-bottom: 0px;
	padding-left: 14px;
	border-bottom: 0px solid #bbb;
	margin: 0px;
	}

/*CONTENT AREA */

#contentwrapper {
	padding-left: 190px;
	height: auto;
}

#content {
	padding: 20px 0 20px 10px;
	height: auto;
}

/*FGI narrow width body text - use this for "text only" pages */
#contentFGI {
	padding: 0px 0 20px 0px;
	width: 550px;
	height: auto;
}

/*FGI full width body text - use this for pages with charts and tables */
#contentFGI2 {
	padding: 0px 0 20px 0px;
	width: 725px;
	height: auto;
}


h1 {
padding-bottom: 1em;
margin-bottom: 0;
}


#content ul {
	margin-left: 0;
	margin-top: 1em;
	padding-left: 0;
}

#content ol {
	margin-left: 0;
	margin-top: 1em;
	padding-left: 25px;

}

#content ul li, #content ol ul li  {
	list-style-type: none;
	background: url(img/bullet.gif) no-repeat 5px 0.5em;
	padding-left: 20px;
	/*margin: 0;*/
}


#content ol li {
	list-style-type: decimal; 
}
#content ol ol li {
	list-style-type: lower-alpha; 
}



#content ul li ul li {
	list-style: circle;
	background: none;
	padding-left: 10px;
	/*margin: 0;*/
}

.noborder, table.fancy td.noborder {
	border: none;
}


/* for things that have a border but shouldnt. */
.noborder, table.noborder, tr.noborder { 	
    border: 0px;
}

#quicklinks {
	border-top: 3px solid #CED6E7;
	background-color: #427BB5;
	margin: 0 10px 0 5px;
	clear: both;
}

#footer {
	clear: both;
	border-top: 1px solid #ddd;
	margin: 0 10px 10px 5px;
	padding: 5px 0;
	color: #999;
	height: 30px;
}

#copyright {
float: right;
text-align:right;
	font-size: 80%;
}


#toolLinks {
float: left;
	font-size: 80%;
}


.searchForm div {
	width: 100%;
	vertical-align: top;

}

.searchForm .label {
	width: 250px;
	padding-top: 4px;
}

.searchForm .field {
	padding-top: 4px;
}

.searchForm p input #Submit {
	color: #00FF00;
	clear: both;
}

.alignment-text {
        font-size: 11px
}

#names.alignment-text  {
    float: left;
    vertical-align: top;
    line-height:1.5em;
    padding-right: 20px;
    padding-left: 5px;
    width: 50px;
}

#sequences.alignment-text  {
    vertical-align:top;
    line-height:1.5em;
    position: absolute;
    top: 10px;
    left: 70px;
    margin: 0;
    padding: 0;
    width: 575px;
    white-space: nowrap;
}

#alignment-tabs pre {
  width: 99%;
  overflow: auto;
  border: none;
  padding: 10px 0px 0px 0px;
  margin: 0;
  vertical-align: top;
  position: relative;
}

div.seq-image {
	overflow:hidden;
	width:100%;
}


div.seq-scroll {
	overflow:auto;
	width:100%;
	height: 20px;
}
/*
#container  {
	width: 100%;
}
*/

.translucent {
	opacity: .9;
}

#genesImage {
	position: absolute; 
	z-index: 0;
	border: none;
}


div.usemap {
    cursor: pointer;
	z-index: 130;
}

div.usemap i { 
	visibility: hidden; 
    text-decoration: none;
    display: none;
}

#genesImageSelector {
	cursor: crosshair;
}

#ep-help {
	font-size: x-small;
	font-style: italic;
}

#sliderbg {
	/* background: #fff url(../images/slider_bg.gif) repeat-x top right; */
	width: 725px;
}


.outputtable {
    background-color: #bbb;
}

.outputtable TD {
    background-color: #fff;
}


.outputtable td,th {
	border-style: none;
}



.outputtable {
    background-color: #bbb;
}

.outputtable TD {
    background-color: #fff;
}

/* This fixes table headers in tapestry table component: */
.outputtable TH TABLE TD {
	background-color: transparent;
}



#topsearchbox {
    padding-top: 10px;
    float: right;
}



#subnav {
    padding-bottom: 10px;
    font-size: 80%;
}

select {
    background-color: #fff;
}

#content h3 {
    line-height: 1.1em;
    padding-bottom: 0px;
}

.image_panel img, img.image_panel {
    border: solid 1px #bbb;
}



.inputtable, .outputtable {
    width: 700px;
    border: solid 1px lightgray;
}

.inputtablelabel {
    font-weight: bold;
}

.inputtablenarrow {
    border: solid 1px #bbb;
    margin-right: 5px;
}

.sidebarimg {
    float: left;
    padding-right: 5px;
    position: absolute;
    left:10px;
    top:95px;
}

body, strong, b {
    color: #000000;
}

.sequence-data {
	font-family: Courier, monospace;
}

.transcript-utr {
	background-color: #cf0;
}

.transcript-cds {
	background-color: white;
}

.transcript-shaded1 {
    background: #ccccff;
} 

.transcript-shaded2 {
    background: #ffff99;
} 

.transcript-start {
    background: #00ff00;
} 

.transcript-stop {
    background: #ff0000;
} 
 
.transcript-intron {
    background: #cccccc;
} 
    
a.error-link:link {
	color: red;
}

a.error-link:visited {
	color: red;
}

a.error-link:hover {
	color: black;
}

a.error-link:active {
	color: red;
}

/* This is for the text search help page: */
.query-eg { 
	font-family:monospace;
	border:1px solid black;
	padding:2px;
	width:500px;
	margin:20px;
}

button {
    border: 1px solid #999; 
    margin-right: 2px; 
    vertical-align: top;
    padding: 2px;
}

/* Offset table headers, currently used in MultiDownload: */
table.offset-table { 
	border-spacing:0px; 
	border-collapse:collapse; 
}
td.offset-table-content { 
	border-left: 1px solid #80ABD7;
}
th.offset-table-spacer { 
	border-left: 1px solid #80ABD7; 
}
th.offset-table-header {
	border-top: 1px solid #80ABD7;
	border-left: 1px solid #80ABD7;
	text-align:left;
	vertical-align:bottom;
	font-weight: normal;
}

tr:first-child th.offset-table-spacer { 
	border-left: 0px solid #80ABD7;
}

table.offset-table tr:hover > td {background-color: #E6EDF5;}

/* Styles used in hit highlighting of search results: */
.text-search-match-field { font-weight: bold; }
.text-search-match { background-color: #E6EDF5; font-style: italic }

/* Tabs */
table.tabview {
	border-spacing:0px;
	border: 1px solid black;
	border-collapse: collapse
}

td.tabview-tab, td.tabview-selected-tab { 
	border-bottom: 1px solid #777777;
	border-left: 1px solid #777777 
}
td.tabview-tab:first-child, td.tabview-selected-tab:first-child { border-left: 1px solid black }

td.tabview-selected-tab { font-weight: bold }
td.tabview-tab { font-weight: bold; background-color:#DDDDDD }



/*Search table paging*/
#searchTablePaging table {
	width: 100%;
	background-color: none;
	border-style: none;
	}
	
#searchTablePaging td {
	background-color: none;
	border-style: none;
	border-color:none;
	}
	

/*FGI tables - use this in a div tag around tables and chart */
#FGItable table, table.fgi {
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
	empty-cells: show;
}
#FGItable table.contenttable {
font-size: 100%;
}
#FGItable table.contenttable td.td-0 {
font-weight: bold;
}

#FGItable searchTablePaging tr {
	background-color: none;
	width:100%;
	border-style: none;
	}
#FGItable td, , table.fgi td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
}
#FGItable th, table.fgi th {
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color:#80ABD7;
	border-right-style: solid;
	border-right-width: 0px;
	font-weight: bold;
	background-color: #80ABD7;
	text-align: left;
	color: #FFFFFF;
	padding-right: 5px;
	vertical-align: bottom;
}


#FGItable th a {
	font-weight: bold;
	text-align: left;
        color: #FFFFFF;
        font-size: 11px;
}

/* Added for nested tables in headers generated by Tapestry. */
#FGItable th table {
        border:0px;
        padding:0px;
        border-spacing:0px;
        margin-right:0px;
        border-right-width:0px;
        border-right-style:none;
        border-right-color:#80ABD7;
        border-left: 0px;
	border-left-color: #80ABD7;
	border-left-style: solid; 
        border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 0px;

	font-weight: bold;
	text-align: left;
        outline-width: 0px;
        background-color: #80ABD7;
	margin-left: 0px;
}

#FGItable th table td {
 border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-left-width: 0px;
	border-right-width: 0px;
	padding: 0px;
        margin-left:0px;
        margin-right:0px;
}



/*FGI tables - use this in a div tag around perameter information */
#FGItable2 table{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	margin-left: 5px;
	}

#FGItable2 td{
	padding: 5px 2px 10px;
	}

#FGItable2  th{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	padding: 5px 2px;
	font-weight: bold;
	}



/*FGI tables - for things like "gene details" */
#FGItable3 table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
}
#FGItable3 td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	}

#FGItable3 th{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	font-weight: bold;
	}

#FGItable3 table td table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 0px;
	border-left: 0px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 0px;
}
#FGItable3 td table tr td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 0px;
	padding-right: 0px;
	font-size: 100%;
	}

#FGItable3 td li{
	font-size: 100%;
	}



/*FGI tables - new revised "gene details" 013107 with lighter lines and grouped category divider heads */
#FGItable5 table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
}
#FGItable5 td{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	}

#FGItable5 th{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	font-weight: bold;
	}

#FGItable5 table td table{
	background-color: #FFFFFF;
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #d1e6fc;
	border-bottom-style: solid;
	border-bottom-width: 0px;
	border-left: 0px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 0px;
}
#FGItable5 td table tr td{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 0px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 0px;
	padding-right: 0px;
	font-size: 100%;
	}

#FGItable5 td li{
	font-size: 100%;
	}

/* No borders around search results header. */
table#searchTablePaging , #searchTablePaging td
{
    border-width: 0px
}

#homeImage {
	border: 1px solid #AAAAAA;
	padding: 4px;
}

/******** Help pages *********/
table.contenttable {
cellpadding: 0;
}



/*Structure */

.hide {
position: absolute;
left: -999px;
width: 990px;
}


#mainwrapper {
border-right: 10px solid #efefef;
width: 950px;
background: #fff url(img/logobg.gif) no-repeat top right;
}

#mainwrapperhome {
border-right: 10px solid #efefef;
width: 770px;
 background: #fff url(img/logobg.gif) no-repeat top right; 
}


/*TABLE STYLES*/

table.fancy {margin: 1em 20px 0 3px; padding-bottom: 10px; border-bottom:10px solid #E6EDF5; }
table.fancy th {text-align:left; background-color: #E6EDF5; border-bottom:5px solid #fff;}
table.fancy th:hover {background-color: #E6EDF5;}
table.fancy td {border-left: 1px dashed #aaa; padding-left:10px;vertical-align:top;}
table.fancy th, table.fancy td {padding: 6px 10px 6px 10px; }
table.fancy tr:hover {background-color: #efefef;}

.pub, table.fancy td.pub {font-style:italic;}

.noborder, table.fancy td.noborder {
border: none;
}

.noborder10, table.fancy td.noborder10 {
border: none;
padding: 10px;
}

.borderbot, table.fancy td.borderbot {
border-bottom:1px dashed #aaa;
border-left: none;
padding: 10px;
}

.bot {
border-bottom:1px dashed #aaa;
}

.boldleftborder, table.fancy td.boldleftborder {
border-left: 2px dashed #999;
padding: 10px;
}

/* for things that have a border but shouldnt. */
.noborder, table.noborder, tr.noborder { 	
    border: 0px;
}

.divider, table.fancy td.divider {
border-bottom:1px dashed #aaa;
border-left: none;
padding: 4px;
background-color: #EBF9E3;

}

table.cal td {
vertical-align: top;
}


#searchLabel {
	display: none;
}

/* TABLE formatting for status data*/

table.stat {
margin-left: 20px;
margin-bottom: 20px;
}

table.stat th {
text-align:left;
padding: 2px;
}

table.stat td {
vertical-align: top;
padding: 0px 2px 0px 2px;

}

table.stat td.tab {
padding-left: 20px;
}

table.stat td.tab2 {
padding-left: 40px;
}

table.stat td.tab3 {
padding-left: 60px;
}

table.stat tr:hover {background-color: #E6EDF5;}



#ortholog-search table {
	border: none;
}
#ortholog-search tr {
	border: none;
}
#ortholog-search th {
	border: none;
}
#ortholog-search td {
	border: none;
	padding: 3px;
	spacing: 0px;
}

table.regions-table {
		font-family: Verdana, Arial, Helvetica, sans-serif;
	
    font-size:    small;			/* intended value for better browsers */
	}
	html>body, html>h3 {
    font-size:    small; 			/* be nice to Opera */
}



/* these styles were added for dot plot only. please mimick for other analyses: */
#dotplot-container {
	padding-top: 20px;
}

#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control-panel_h {
	font-family: Verdana, Arial, Helvetica, sans-serif;
	font-size: 11px;
	font-weight: bold;
	color: #FFFFFF;
}
#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control #yui-gen0 td {
	font-size: 80%;
	line-height: 1.1em;
}
#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control-panel_h td {
	font-family: Verdana, Arial, Helvetica, sans-serif;
	font-size: 11px;
	font-weight: bold;
	color: #FFFFFF;
}

#chromomap-control-panel_h {
	background-color: #80abd7;
}
#controlbox  {
	margin: 0px;
	padding: 5px;

}
#controlbox td {
	margin: 0px;
	padding: 0px;

}

#names.alignment-text  {
    float: left;
    vertical-align: top;
    padding-right: 20px;
    padding-left: 5px;
    width: 100px;
    position: inherit;
}

#sequences.alignment-text  {
    vertical-align:top;
    position: absolute;
    top: 10px;
    left: 125px;
    margin: 0;
    padding: 0;
    width: 575px;
    white-space: nowrap;
}

#alignment-tabs pre {
  line-height: 1.5em;
  width: 100%;
  overflow: auto;
  border: none;
  padding: 10px 0px 0px 0px;
  margin: 0;
  vertical-align: top;
  position: relative;
}

/* marker for tapestry components */

.tapestry {
border:  1px solid red;
}