News

4/11/2012    Release of our updated Loa Loa assembly + annotation

We generated a new Loa loa assembly (V3) after removing/trimming contaminating contigs from the previous (V2) assembly. As a result of this update, 18 spurious genes have been removed:

  • LOAG_16006
  • LOAG_16249
  • LOAG_19014
  • LOAG_19181
  • LOAG_19231
  • LOAG_19274
  • LOAG_19290
  • LOAG_19292
  • LOAG_19295
  • LOAG_19303
  • LOAG_19310
  • LOAG_19314
  • LOAG_19337
  • LOAG_19338
  • LOAG_19339
  • LOAG_19342
  • LOAG_19345
  • LOAG_19346
Strain Name Coverage Total Genes Accession Submission Date
Loa loa 20x 14,907 ADBU02000000 4/11/2012

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here.

2/23/2011    Release of our updated Loa Loa annotation

Strain Name Total Genes Accession Submission Date
Loa loa 14,925 ADBU02000000 2/23/2011

The annotated release presents:

A full summary can be found here.

10/8/2010    Release of our updated Loa Loa assembly with scaffolds and the annotations transferred from previous assembly

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Accession Total Genes Submission Date
Loa loa 20X ADBU02000000 16,318 10/8/2010

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here.

6/23/2010    Wolbachia of Brugia malayi

To aid in comparative analysis, we have added the fully-sequenced Wolbachia endosymbiont of Brugia malayi, as well as its annotation.

Sequencing of this bacteria was done at New England Biolabs and Integrated Genomics, Inc.

5/7/2010    Release of our annotation of 2 Filarial worm assemblies

Strain Name Total Genes Accession Submission Date
Loa loa 16,333 ADBU01000000 5/7/2010
Wuchereria bancrofti 19,327 ADBV01000000 5/7/2010

The annotated release presents:

A full summary can be found here.

2/2/2010    Release of assemblies of 2 strains of Wolbachia

Strain Name Coverage Accession Submission Date
Wolbachia endosymbiont of Wuchereria bancrofti 40.88X ADHD00000000 2/2/2010
Wolbachia endosymbiont of Onchocerca volvulus 5.88X ADHE00000000 2/2/2010

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

12/21/2009    Release of the assemblies of 3 Filarial worms

Strain Name Coverage Accession Submission Date
Loa loa 20X ADBU01000000 12/21/2009
Wuchereria bancrofti 12X ADBV01000000 12/21/2009
Onchocerca volvulus 5X ADBW01000000 12/21/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.