Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
E. coli 4_1_47FAA 14.0x 5.28 Mb 5.26 Mb 43 297.08 Kb 109 94.99 Kb 99.37
Escherichia sp. 3_2_53FAA (v2) 18.94x 5.15 Mb 5.14 Mb 12 953.65 Kb 104 213.7 Kb 99.84
Escherichia sp. 4_1_40B (v2) 34.25x 4.91 Mb 4.91 Mb 8 2.71 Mb 65 202.05 Kb 99.93
Escherichia sp. 1_1_43 (v2) 31.64x 4.84 Mb 4.71 Mb 47 2.49 Mb 174 77.33 Kb 99.98

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome