News

9/5/2012    Dermatophyte genome analysis published

Our paper "Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection" is available today in mBio.

10/1/2010    Release of our updated annotation of 5 Dermatophyte genomes

Strain Name Total Genes Accession Submission Date
Microsporum canis CBS 113480 8,915 ABVF01000000 10/1/2010
Microsporum gypseum CBS 118893 8,907 ABQE01000000 10/1/2010
Trichophyton equinum CBS127.97 8,679 ABWI01000000 10/1/2010
Trichophyton rubrum CBS 118892 8,707 ACPH01000000 10/1/2010
Trichophyton tonsurans CBS 112818 8,523 ACPI01000000 10/1/2010

For these annotations, a consistent protocol for gene-calling, filtering and gene product naming was used. The updates include:

  • Gene-calls with EVM, dynamic programming and comparative genomics info.
  • Gene filtering to remove spurious genes from repeat elements and other spurious gene models.
  • Gene product naming using Hmmer equivalog info and blast against SwissProt proteins with curated gene names.

The lists of changes included in the updated gene sets for each genome can be found here, under 'Supplementary Downloads'.

This annotated release presents:

A full summary can be found here.

03/26/2010   

Two dermatophyte genomes from Hans Knoell Institute added to this site:

We have incorporated two additional dermatophyte genomes into this website.
Strain Name Total Genes Source
Arthroderma benhamiae CBS 112371 7,980 Hans Knoell Institute
Trichophyton verrucosum HKI 0517 8,024 Hans Knoell Institute

1/15/2010    Release of our annotation of two Trichophyton genomes

Strain Name Total Genes Accession Submission Date
Trichophyton rubrum CBS 118892 8,638 ACPH01000000 1/15/2010
Trichophyton tonsurans CBS 112818 8,230 ACPI01000000 1/15/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

1/15/2010    Release of our mitochondrial annotation of three Dermatophyte genomes

Strain Name Total Genes Accession Submission Date
Microsporum gypseum CBS 118893 mitochondrion 14 ABQE01000000 1/15/2010
Trichophyton equinum CBS 127.97 mitochondrion 15 ABWI01000000 1/15/2010
Trichophyton rubrum CBS 118892 mitochondrion 18 ACPH01000000 1/15/2010
Trichophyton tonsurans CBS 112818 mitochondrion 15 ACPI01000000 1/15/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

1/15/2010    Release of our updated assembly of Trichophyton rubrum

Strain Name Coverage Accession Submission Date
Trichophyton rubrum CBS 118892 8.14X (7.34X Q>20) ACPH01000000 1/15/2010

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

1/15/2010    Release of our updated mitochondrial assemblies of three Dermatophyte genomes

Strain Name Accession Submission Date
Microsporum gypseum CBS 118893 mitochondrion ABQE01000000 1/15/2010
Trichophyton equinum CBS 127.97 mitochondrion ABWI01000000 1/15/2010
Trichophyton rubrum CBS 118892 mitochondrion ACPH01000000 1/15/2010

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

7/2/2009    Release of our sequence assembly of 2 strains of Trichophyton

Strain Name Coverage Accession Submission Date
Trichophyton rubrum CBS 118892 8.19X (7.49X Q>20) ACPH01000000 7/2/2009
Trichophyton tonsurans CBS 112818 5.71X (5.05X Q>20) ACPI01000000 7/2/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

3/6/2009    Release of our annotation of Microsporum canis CBS 113480 and Trichophyton equinum CBS127.97

Strain Name Total Genes Accession Submission Date
Microsporum canis CBS 113480 8,765 ABVF01000000 3/6/2009
Microsporum canis CBS 113480 mitochondria 12 ABVF01000000 3/6/2009
Trichophyton equinum CBS127.97 8,560 ABWI01000000 3/6/2009
Trichophyton equinum CBS127.97 mitochondria 16 ABWI01000000 3/6/2009

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

10/7/2008    Release of our sequence assembly of Microsporum canis CBS 113480 and Trichophyton equinum CBS127.97

Strain Name Coverage Accession Submission Date
Microsporum canis CBS 113480 8X ABVF01000000 10/07/2008
Trichophyton equinum CBS127.97 4.4X ABWI01000000 10/07/2008

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

10/7/2008    Release of our annotation of Microsporum gypseum CBS 118893

Strain Name Total Genes Accession Submission Date
M. gypseum CBS 118893 8,876 ABQE01000000 10/07/2008
M. gypseum CBS 118893 (mitochondrion) 9 ABQE01000000 10/07/2008

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

6/19/2008    Release of our 8X sequence assembly of Microsporum gypseum CBS 118893

The initial release of our draft sequence assembly of Microsporum gypseum strain CBS 118893. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project ABQE00000000. The version described in this release is the first version, ABQE01000000.

Important information about this release can be found here.

This initial release allows:

  • BLAST searches against our partially finished genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly