Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
M. canis CBS 113480 7.78X (7.1X Q>20) 23.24 Mb 23.12 Mb 16 2.92 Mb 309 135.85 Kb 99.36
M. gypseum CBS 118893 9.06X (7.94X Q>20) 23.25 Mb 23.09 Mb 18 3.23 Mb 317 146.43 Kb 99.19
T. equinum CBS 127.97 4.88X (4.42X Q>20) 24.13 Mb 23.45 Mb 123 397.01 Kb 1,714 26.79 Kb 96.93
T. rubrum CBS 118892 8.14X (7.34X Q>20) 22.5 Mb 22.1 Mb 35 2.16 Mb 622 85.37 Kb 99.07
T. tonsurans CBS 112818 5.71X (5.05X Q>20) 22.96 Mb 22.48 Mb 110 364.6 Kb 1,163 44.7 Kb 97.24
M. canis CBS 113480 mito N/A 21.45 Kb 21.45 Kb 1 21.45 Kb 1 21.45 Kb 99.30
M. gypseum CBS 118893 mito N/A 23.54 Kb 22.9 Kb 1 23.54 Kb 2 20.2 Kb 96.90
T. equinum CBS 127.97 mito N/A 24.1 Kb 24.1 Kb 1 24.1 Kb 1 24.1 Kb 99.83
T. rubrum CBS 118892 mito N/A 27.68 Kb 27.46 Kb 1 27.68 Kb 2 24.12 Kb 97.88
T. tonsurans CBS 112818 mito N/A 24.51 Kb 24.51 Kb 1 24.51 Kb 1 24.51 Kb 98.51
A. benhamiae CBS 112371 N/A 22.22 Mb 22.22 Mb 68 644.46 Kb 68 644.46 Kb -
T. verrucosum HKI 0517 -- 22.54 Mb 22.54 Mb 523 75.56 Kb 523 75.56 Kb -
T. interdigitale H6 N/A 21.94 Mb 21.92 Mb 2,831 18.24 Kb 2,951 18.19 Kb -
T. interdigitale MR816 N/A 22.47 Mb 22.47 Mb 956 58.1 Kb 956 58.1 Kb -
T. rubrum (morphotype fischeri) CBS 100081 N/A 23.06 Mb 23.06 Mb 550 128.64 Kb 554 127.78 Kb -
T. rubrum (morphotype fischeri) CBS 288.86 N/A 23.13 Mb 23.13 Mb 539 128.35 Kb 540 128.35 Kb -
T. rubrum (morphotype kanei) CBS 289.86 N/A 23.05 Mb 23.05 Mb 521 143.21 Kb 523 143.21 Kb -
T. rubrum (morphotype megninii) CBS 735.88 N/A 22.63 Mb 22.62 Mb 342 416.88 Kb 368 351.74 Kb -
T. rubrum (morphotype raubitschekii) CBS 202.88 N/A 23.12 Mb 23.11 Mb 533 146.88 Kb 551 139.16 Kb -
T. rubrum (morphotype soudanense) CBS 452.61 -- 22.85 Mb 22.85 Mb 420 185.33 Kb 421 183.99 Kb -
T. rubrum D6 N/A 23.12 Mb 23.12 Mb 574 147.11 Kb 574 147.11 Kb -
T. rubrum MR850 N/A 23.17 Mb 23.17 Mb 535 155.79 Kb 539 155.79 Kb -
T. rubrum MR1448 N/A 23.13 Mb 23.13 Mb 572 136.04 Kb 573 136.04 Kb -
T. rubrum MR1459 N/A 23.16 Mb 23.16 Mb 486 157.21 Kb 487 157.21 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome