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Genome Index

Genome Stats

Size Chrs %GC Genes tRNAs rRNAs % Repeat
C. pipiens 579.04 Mb N/A 37.42 20,306 N/A N/A N/A

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. pipiens -- 579.04 Mb 539.96 Mb 3,171 486.76 Kb 48,671 28.55 Kb 87.33

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Chrs number of chromosomes
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • % Repeat percentage of genome comprised of reptitive sequences
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)