Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. graminicola M1.001 9.09X (8.17X Q>20) 51.6 Mb 50.87 Mb 653 579.19 Kb 1,151 228.96 Kb 98.50
C. graminicola mito -- 39.65 Kb 39.65 Kb 1 39.65 Kb 1 39.65 Kb -
C. higginsianum IMI 349063 -- 49.08 Mb 49.08 Mb 10,235 6.15 Kb 10,235 6.15 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid
C. graminicola M1.001 468,734 67,151

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome