News

3/22/2010    Release of our annotation of C. immitis RS Finished sequence assembly

Strain Name Accession Total Genes Annotation Submission Date
C. immitis RS AAEC03000000 9,757 3/22/2010

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

3/22/2010    Release of our updated assembly and annotation of C. posadasii Silveira

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Accession Total Genes Submission Date
C. posadasii Silveira ABAI02000000 10,225 3/22/2010

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

3/27/2009    Release of C. immitis RS Finished sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAEC00000000. The version described in this release is the third version, AAEC03000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This release allows:

  • BLAST searches against our Finished genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

7/23/2008    Update -- C. posadasii RMSCC 1040 removed

The assembly for C. posadasii RMSCC 1040 has been removed from our site and from NCBI due to concerns with the quality of the data. The template for this genome was found to be contaminated at the collaborator's site during the DNA preparation stage.

5/12/2008    Release of our annotation of 5 strains of Coccidioides

Strain Name Total Genes Accession Submission Date
C. posadasii Silveira 10061 ABAI01000000 5/12/2008
C. posadasii RMSCC 3488 9897 ABBB01000000 5/12/2008
C. immitis RMSCC 2394 10403 AATX01000000 5/12/2008
C. immitis RMSCC 3703 10423 ABBC01000000 5/12/2008
C. immitis H538.4 10608 AASO01000000 5/12/2008
C. immitis RS 10355 AAEC02000000 5/12/2008

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

1/22/2008    Initial Release of our assemblies of 5 strains of Coccidioides

Strain Name Coverage Accession Submission Date
C. posadasii RMSCC 1037 3X ABIS01000000 1/22/2008
C. posadasii RMSCC 1038 3X ABIT01000000 1/22/2008
C. posadasii RMSCC 1040 3X ABIU01000000 1/22/2008
C. posadasii CPA 0020 3X ABIV01000000 1/22/2008
C. posadasii CPA 0066 3X ABIW01000000 1/22/2008

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

10/31/2007    Initial Release of C. posadasii RMSCC 2133 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABFM00000000. The version described in this release is the first version, ABFM01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 6.69X (5.74 Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

10/31/2007    Initial Release of C. posadasii RMSCC 3700 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABFN00000000. The version described in this release is the first version, ABFN01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 3.58X (3.12 Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

10/31/2007    Initial Release of C. posadasii CPA 0001 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABFO00000000. The version described in this release is the first version, ABFO01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 3.09X (2.69 Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

6/29/2007    Initial Release of C. immitis RMSCC 3703 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABBC00000000. The version described in this release is the first version, ABBC01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 3.17X (2.72 Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

6/29/2007    Initial Release of C. posadasii RMSCC 3488 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABBB00000000. The version described in this release is the first version, ABBB01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 8.52X (7.35 Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

5/31/2007    Initial Release of C. posadasii Silveira sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession ABAI00000000. The version described in this release is the first version, ABAI01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 5.23X (4.52x Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

12/22/2006    Broad EST data available for download

C. immitis RS and C. posadasii Silveira EST sequences from mycelium, 24-, 72-, and 120-hour spherules can now be downloaded here. These data were generated as part of the Broad's NIAID-supported Coccidioides comparative genomics project. RNA used for library construction were provided by Marc Orbach.

10/6/2006    Initial release of C. immitis RMSCC 2394 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AATX00000000. The version described in this release is the first version, AATX01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This initial release allows:

  • BLAST searches against our 8.22X (6.83x Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

9/19/2006    Initial release of C. immitis H538.4 sequence assembly

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AASO00000000. The version described in this release is the first version, AASO01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.

This initial release allows:

  • BLAST searches against our 3.41X (2.86x Q>20) genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

Important information about this release can be found here.

1/25/06    Release of C. immitis RS automated annotation

This annotated release presents:

  • A predicted protein gene set of 10,457 genes
  • Protein BLAST databases
  • Precomputed results of BlastX and HMMer Analyses
  • Ab-initio gene predictions (Genewise, FgeneSH, GeneID)
  • tRNA predictions
  • Search and visualizations for all the features

A full summary can be found here.

9/21/2005    Initial release of 14X sequence assembly of C. immitis RS

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAEC00000000. The version described in this release is the second version, AAEC02000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.

This initial release allows:

  • BLAST searches against our 14.41X genome assembly
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly

There will be an update to this release with the results of automated gene annotation released shortly.

Important information about this release can be found here.

7/20/2004    Initial release of 10X sequence assembly of C. immitis RS

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AAEC00000000. The version described in this release is the first version, AAEC01000000. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository.