Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. immitis RS (finished) N/A 28.95 Mb 28.95 Mb 6 4.32 Mb 10 4.31 Mb -
C. immitis H538.4 N/A 27.73 Mb 25.55 Mb 553 369.3 Kb 4,341 11.85 Kb 86.67
C. immitis RMSCC 2394 N/A 28.82 Mb 28.35 Mb 23 3.57 Mb 517 160.06 Kb 98.16
C. immitis RMSCC 3703 N/A 27.65 Mb 25.17 Mb 286 232.99 Kb 5,030 8.9 Kb 90.26
C. posadasii RMSCC 3488 N/A 28.15 Mb 28.02 Mb 6 4.35 Mb 284 235.08 Kb 99.35
C. posadasii Silveira N/A 27.58 Mb 27.43 Mb 54 1.22 Mb 464 136.65 Kb 98.95
C. posadasii RMSCC 2133 N/A 27.85 Mb 27.03 Mb 53 3.72 Mb 1,050 73.67 Kb 97.73
C. posadasii RMSCC 3700 N/A 25.45 Mb 23.4 Mb 241 284.65 Kb 3,094 15.87 Kb 91.94
C. posadasii CPA 0001 N/A 28.62 Mb 25.89 Mb 255 210.52 Kb 4,994 8.46 Kb 90.24
C. posadasii CPA 0020 N/A 27.29 Mb 24.78 Mb 620 74.9 Kb 4,513 10.26 Kb 91.05
C. posadasii CPA 0066 N/A 27.71 Mb 25.45 Mb 473 87.6 Kb 4,262 10.97 Kb 91.12
C. posadasii RMSCC 1037 N/A 26.59 Mb 24.61 Mb 633 62.33 Kb 4,313 11.21 Kb 91.25
C. posadasii RMSCC 1038 N/A 26.12 Mb 23.54 Mb 551 77.34 Kb 4,886 9.48 Kb 90.50
C. posadasii C735 (JCVI) N/A 26.69 Mb 26.69 Mb 85 1.06 Mb 85 1.06 Mb -
C. immitis RS mitochondria (finished) N/A 68.09 Kb 68.09 Kb 1 68.09 Kb 1 68.09 Kb -
C. immitis H538.4 mitochondria N/A 49.12 Kb 48.43 Kb 3 17.59 Kb 4 14.73 Kb 94.79
C. immitis RMSCC 2394 mitochondria N/A 91.49 Kb 89.97 Kb 8 22.42 Kb 10 15.93 Kb 93.91
C. immitis RMSCC 3703 mitochondria N/A 60.25 Kb 60.25 Kb 3 34.39 Kb 3 34.39 Kb 98.09
C. posadasii RMSCC 3488 mitochondria N/A 64.61 Kb 64.61 Kb 3 32.32 Kb 3 32.32 Kb 98.89
C. posadasii str. Silveira mitochondria N/A 47.25 Kb 47.25 Kb 3 25.98 Kb 3 25.98 Kb 98.66
C. posadasii RMSCC 2133 mitochondria -- 70.11 Kb 70.11 Kb 2 61.5 Kb 2 61.5 Kb 99.60
C. posadasii RMSCC 3700 mitochondria N/A 34.93 Kb 31.88 Kb 2 19.76 Kb 5 17.86 Kb 94.17
C. posadasii CPA 0001 mitochondria N/A 74.47 Kb 74.47 Kb 1 74.47 Kb 1 74.47 Kb 99.11
C. posadasii CPA 0020 mitochondria N/A 58.05 Kb 56.5 Kb 4 16.34 Kb 6 13.87 Kb 98.05
C. posadasii CPA 0066 mitochondria N/A 78.14 Kb 74.72 Kb 2 64.53 Kb 7 13.16 Kb 98.65
C. posadasii RMSCC 1037 mitochondria -- 69.95 Kb 69.57 Kb 2 35.11 Kb 3 35.11 Kb 98.88
C. posadasii RMSCC 1038 mitochondria -- 59.52 Kb 57.08 Kb 3 36.56 Kb 7 13.14 Kb 99.03

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome