Genome and Assembly Statistics

Genome Stats

Size Chrs %GC Genes tRNAs rRNAs % Repeat
C. aldenense WAL-18727 6.19 Mb -- 49.74 5,828 69 8 N/A
C. bolteae WAL-14578 6.6 Mb N/A 49.05 6,063 75 5 N/A
C. citroniae WAL-17108 6.65 Mb N/A 48.92 6,079 69 7 N/A
C. citroniae WAL-19142 6.25 Mb N/A 49.45 5,704 66 8 N/A
C. clostr. 2_1_49FAA 5.5 Mb N/A 48.93 5,256 77 6 N/A
C. clostr. WAL-7855 5.46 Mb N/A 48.98 5,224 76 6 N/A
C. hathewayi WAL-18680 5.7 Mb N/A 50.02 5,184 61 7 N/A
C. orbisc. 1_3_50AFAA 4.38 Mb N/A 60.53 4,335 53 5 N/A
C. perfringens WAL-14572 3.47 Mb N/A 28.10 3,183 95 13 N/A
C. symbiosum WAL-14163 5.35 Mb N/A 47.73 4,691 66 4 --
C. symbiosum WAL-14673 4.92 Mb N/A 48.17 4,198 67 4 N/A
Clostridium sp. D5 5.43 Mb N/A 45.47 4,566 52 3 --
Clostr. sp. 1_1_41A1FAA 3.04 Mb N/A 28.64 2,952 86 16 N/A
Clostr. sp. 7_3_54FAA 5.46 Mb -- 48.12 4,993 70 4 --
Clostridium sp. 7_2_43FAA (v2) 3.81 Mb -- 27.80 3,464 74 12 N/A
C. innocuum 6_1_30 4.96 Mb -- 43.68 4,908 47 10 --

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. aldenense WAL-18727 15x 6.19 Mb 6.13 Mb 36 3.34 Mb 169 70.38 Kb 99.40
C. bolteae WAL-14578 39x 6.6 Mb 6.58 Mb 30 668.22 Kb 89 187.93 Kb 99.91
C. citroniae WAL-17108 27x 6.65 Mb 6.62 Mb 41 473.03 Kb 83 189.59 Kb 99.86
C. citroniae WAL-19142 28x 6.25 Mb 6.23 Mb 38 694.78 Kb 91 137.77 Kb 99.89
C. clostr. 2_1_49FAA 28x 5.5 Mb 5.46 Mb 69 722.83 Kb 148 95.66 Kb 99.79
C. clostr. WAL-7855 34x 5.46 Mb 5.43 Mb 70 262.76 Kb 130 94.34 Kb 99.86
C. hathewayi WAL-18680 17x 5.7 Mb 5.65 Mb 18 3.51 Mb 142 94 Kb 99.69
C. orbisc. 1_3_50AFAA 19x 4.38 Mb 4.32 Mb 61 808.09 Kb 189 45.53 Kb 99.35
C. perfringens WAL-14572 19x 3.47 Mb 3.46 Mb 20 2.08 Mb 35 307.73 Kb 99.75
C. symbiosum WAL-14163 20x 5.35 Mb 5.31 Mb 52 328.03 Kb 142 75.69 Kb 99.68
C. symbiosum WAL-14673 20x 4.92 Mb 4.86 Mb 55 628.41 Kb 195 50.06 Kb 99.44
Clostridium sp. D5 36x 5.43 Mb 5.37 Mb 47 402.54 Kb 171 56.06 Kb 99.88
Clostr. sp. 1_1_41A1FAA 25x 3.04 Mb 3.03 Mb 22 1.56 Mb 37 231.98 Kb 99.30
Clostr. sp. 7_3_54FAA 37x 5.46 Mb 5.43 Mb 51 459.67 Kb 172 61.87 Kb 99.68
Clostridium sp. 7_2_43FAA (v2) 29x 3.81 Mb 3.81 Mb 5 3.23 Mb 58 146.76 Kb 99.79
C. innocuum 6_1_30 18.46x 4.96 Mb 4.93 Mb 14 1.04 Mb 66 123.04 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Chrs number of chromosomes
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • % Repeat percentage of genome comprised of reptitive sequences
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)