Genome and Assembly Statistics

Genome Stats

Size Chrs %GC Genes tRNAs rRNAs % Repeat
C. freundii 4_7_47CFAA 5.12 Mb -- 52.09 4,861 77 11 N/A
Citrobacter sp. 30_2 5.02 Mb -- 51.84 4,688 75 9 N/A
C. koseri (GB) 4.74 Mb -- 53.83 5,008 83 103 --

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. freundii 4_7_47CFAA 14.0x 5.12 Mb 5.12 Mb 11 2.63 Mb 36 306.7 Kb 99.66
Citrobacter sp. 30_2 N/A 5.02 Mb 5.02 Mb 9 770.62 Kb 30 346.17 Kb 99.92
C. koseri (GB) -- 4.74 Mb 4.74 Mb 3 4.72 Mb 3 4.72 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Chrs number of chromosomes
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • % Repeat percentage of genome comprised of reptitive sequences
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)