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Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. globosum -- 34.89 Mb 34.34 Mb 37 4.72 Mb 1,245 50.76 Kb 90.19

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid
C. globosum N/A --

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome