News

12/2/2011    The release of our assemblies and annotation of 8 strains of Brucella

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Total Genes Accession Submission Date
B. abortus bv. 1 NI435a 130x 3,129 AGVF01000000 12/2/2011
B. abortus bv. 1 NI474 46x 3,131 AGVG01000000 12/2/2011
B. abortus bv. 1 NI486 231x 3,131 AGVH01000000 12/2/2011
B. abortus bv. 1 NI488 130x 3,137 AGVI01000000 12/2/2011
B. abortus bv. 1 NI010 46x 3,127 AGVJ01000000 12/2/2011
B. abortus bv. 1 NI016 91x 3,128 AGVK01000000 12/2/2011
B. abortus bv. 1 NI021 177x 3,132 AGVL01000000 12/2/2011
B. abortus bv. 1 NI259 129x 3,133 AGVM01000000 12/2/2011

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

6/25/2010    SNP data release

The results of SNP analysis on Brucella can be found here.

Information on the strains that we have called SNPs for is available in our Downloads page, or directly here.

2/11/10    The release of our assemblies and annotation of 2 strains of Brucella

The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:

Strain Name Coverage Total Genes Accession Submission Date
Brucella sp. NVSL 07-0026 18.96x 3,248 ACXD01000000 2/11/10
B. abortus bv. 5 str. B3196 22.40x 3,229 ACXC01000000 2/11/10

The assembly release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

A full summary can be found here.

The annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

6/2/2009    The release of our annotation of 3 strains of Brucella

Strain Name Total Genes Accession Submission Date
B. abortus NCTC 8038 3,044 ACJJ01000000 6/2/2009
B. melitensis 16M 3,083 ACJL01000000 6/2/2009
B. suis bv. 4 str. 40 3,054 ACJK01000000 6/2/2009

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

6/2/2009    Initial Release of our assemblies of 3 strains of Brucella

Strain Name Coverage Accession Submission Date
B. abortus NCTC 8038 80.89x ACJJ01000000 6/2/2009
B. melitensis 16M 74.08x ACJL01000000 6/2/2009
B. suis bv. 4 str. 40 51.78x ACJK01000000 6/2/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

3/13/2009    The release of our annotation of 20 strains of Brucella

Strain Name Coverage Accession Submission Date
B. abortus bv. 6 str. 870 3,219 ACBG01000000 3/13/2009
B. abortus bv. 4 str. 292 3,219 ACBH01000000 3/13/2009
B. abortus bv. 3 str. Tulya 3,261 ACBI01000000 3/13/2009
B. abortus bv. 2 str. 86/8/59 3,233 ACBJ01000000 3/13/2009
B. abortus bv. 9 str. C68 3,192 ACEL01000000 3/11/2009
B. suis bv. 5 str. 513 3,246 ACBK01000000 3/13/2009
B. suis bv. 3 str. 686 3,230 ACBL01000000 3/13/2009
B. pinnipedialis B2/94 3,290 ACBN01000000 3/13/2009
B. pinnipedialis M163/99/10 3,296 ACBM01000000 3/13/2009
B. pinnipedialis M292/94/1 3,237 ACEF01000000 3/13/2009
B. ceti M644/93/1 3,243 ACBO01000000 3/13/2009
B. ceti M13/05/1 3,231 ACBP01000000 3/13/2009
B. ceti M490/95/1 3,208 ACEJ01000000 3/13/2009
B. ceti B1/94 3,189 ACEK01000000 3/13/2009
B. melitensis bv. 1 str. Rev.1 3,221 ACEG01000000 3/13/2009
B. melitensis bv. 2 str. 63/9 3,209 ACEM01000000 3/13/2009
B. melitensis bv. 3 str. Ether 3,239 ACEI01000000 3/13/2009
B. neotomae 5K33 3,217 ACEH01000000 3/13/2009
B. sp 83/13 2,983 ACBQ01000000 3/13/2009
B. sp F5/99 3,223 ACFF01000000 3/13/2009

This annotated release presents:

A full summary can be found here. Click here for a description of how the gene predictions were generated.

3/13/2009    Initial Release of our assembly of 1 strain of Brucella

Strain Name Coverage Accession Submission Date
B. sp F5/99 27.78X ACFF01000000 3/13/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

1/28/2009    Initial Release of our assemblies of 8 strains of Brucella

Strain Name Coverage Accession Submission Date
B. abortus bv. 9 str. C68 40.71x ACEL01000000 1/28/2009
B. ceti B1/94 35.16x ACEK01000000 1/28/2009
B. ceti M490/95/1 38.16x ACEJ01000000 1/28/2009
B. melitensis bv. 2 str. 63/9 16.24x ACEM01000000 1/28/2009
B. melitensis bv. 3 str. Ether 40.67x ACEI01000000 1/28/2009
B. melitensis bv. 1 str. Rev.1 32.14x ACEG01000000 1/28/2009
B. neotomae 5K33 36.42x ACEH01000000 1/28/2009
B. pinnipedialis M292/94/1 36.48x ACEF01000000 1/28/2009

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.

12/17/2008    Initial Release of our assemblies of 11 strains of Brucella

Strain Name Coverage Accession Submission Date
B. abortus bv. 6 str. 870 37.90x ACBG01000000 12/17/2008
B. abortus bv. 4 str. 292 42.24x ACBH01000000 12/17/2008
B. abortus bv. 3 str. Tulya 39.25x ACBI01000000 12/17/2008
B. abortus bv. 2 str. 86/8/59 28.75x ACBJ01000000 12/17/2008
B. suis bv. 5 513 42.62x ACBK01000000 12/17/2008
B. suis bv. 3 str. 686 39.56x ACBL01000000 12/17/2008
B. pinnipedialis M163/99/10 25.37x ACBM01000000 12/17/2008
B. pinnipedialis B2/94 32.76x ACBN01000000 12/17/2008
B. ceti M644/93/1 20.78x ACBO01000000 12/17/2008
B. ceti M13/05/1 42.17x ACBP01000000 12/17/2008
B. sp 83/13 31.62x ACBQ01000000 12/17/2008

This release allows:

  • BLAST searches against our genome assemblies
  • Downloads of the consensus sequence and additional files for the genome assembly
  • Search and download a particular region of the genome assembly.