Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
B. cinerea (B05.10) -- 42.66 Mb 38.79 Mb 588 257.7 Kb 4,534 16.37 Kb 98.00
B. cinerea B05.10 mito -- 82.21 Kb 82.21 Kb 1 82.21 Kb 1 82.21 Kb -
B. cinerea (B05.10_vankan) -- 41.16 Mb 41.16 Mb 82 969.82 Kb 82 969.82 Kb -
B. cinerea (T4) -- 41.61 Mb 41.61 Mb 56 1.71 Mb 56 1.71 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome