/* Extra styles needed by templates */
.hide {
	display: none;
}

#sidebarleft {
	border-left: 0px;
}

/* Styles carried forward from the comparative redesign */
/*FGI narrow width body text - use this for "text only" pages */
#contentFGI {
	padding: 0px 0 20px 0px;
	width: 550px;
	height: auto;
}

/*FGI full width body text - use this for pages with charts and tables */
#contentFGI2 {
	width:  700px;
	height: auto;
	padding-top: 0px;
	padding-right: 0;
	padding-bottom: 20px;
	padding-left: 0px;
}


#FGItable table {
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
    padding-top: 0px;
    padding-left: 0px;
}

#FGItable searchTablePaging tr {

	width:100%;
	border-style: none;
	}

#FGItable td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-left: 5px;
	padding-right: 5px;
	padding-top: 1px;
	padding-bottom: 1px;
}
#FGItable th {
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color:#80ABD7;
	border-right-style: solid;
	border-right-width: 0px;
	font-weight: bold;
	background-color: #80ABD7;
	text-align: left;
	color: #FFFFFF;
	padding-right: 5px;
	vertical-align: bottom;
}


#FGItable th a {
	font-weight: bold;
	text-align: left;
        color: #FFFFFF;
        font-size: 11px;
}

/* Added for nested tables in headers generated by Tapestry. */
#FGItable th table {
        border:0px;
        padding:0px;
        border-spacing:0px;
        margin-right:0px;
        border-right-width:0px;
        border-right-style:none;
        border-right-color:#80ABD7;
        border-left: 0px;
	border-left-color: #80ABD7;
	border-left-style: solid; 
        border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 0px;

	font-weight: bold;
	text-align: left;
        outline-width: 0px;
        background-color: #80ABD7;
	margin-left: 0px;
}

#FGItable th table td {
 border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-left-width: 0px;
	border-right-width: 0px;
	padding: 0px;
        margin-left:0px;
        margin-right:0px;
}



/*FGI tables - use this in a div tag around perameter information */
#FGItable2 table{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	margin-left: 5px;
	margin-right: -75px;

	padding-left: 0px;
	padding-top: 0px;
	}

#FGItable2 td{
	padding: 5px 2px 10px;
	}

#FGItable2  th{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	padding: 5px 2px;
	font-weight: bold;
	}



/*FGI tables - for things like "gene details" */
#FGItable3 table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
}
#FGItable3 td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	}

#FGItable3 th{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	font-weight: bold;
	}

#FGItable3 table td table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 0px;
	border-left: 0px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 0px;
}
#FGItable3 td table tr td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 0px;
	padding-right: 0px;
	font-size: 100%;
	}

#FGItable3 td li{
	font-size: 100%;
	}



/*FGI tables - new revised "gene details" 013107 with lighter lines and grouped category divider heads */
#FGItable5 table{
	background-color: #FFFFFF;
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 2px;
	border-left: 1px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 5px;
	padding-top: 0px;
	padding-left: 0px
}
#FGItable5 td{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	text-align:left;
	padding-left: 5px;
	}

#FGItable5 th{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 1px;
	padding-right: 5px;
	font-weight: bold;
	text-align:left; 
	padding-left:5px;
	}

#FGItable5 table td table{
	background-color: #FFFFFF;
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 0px;
	border-bottom-color: #d1e6fc;
	border-bottom-style: solid;
	border-bottom-width: 0px;
	border-left: 0px;
	border-left-color: #DFDFDF;
	border-left-style: solid;
	margin-left: 0px;
}
#FGItable5 td table tr td{
	border-top-color: #d1e6fc;
	border-top-style: solid;
	border-top-width: 0px;
	border-right-color: #DFDFDF;
	border-right-style: solid;
	border-right-width: 0px;
	padding-right: 0px;
	font-size: 100%;
	}

#FGItable5 td li{
	font-size: 100%;
	}

/* No borders around search results header. */
table#searchTablePaging , #searchTablePaging td
{
    border-width: 0px
}

.backtotop {
	font-size: 90%;
	line-height: 24px;
	font-weight: bold;
	font-variant: small-caps;
	text-align: right;
}

.outline td
{
	font-size: 100%;
}
.pfamselector {
	font-size: x-small;
	text-align: center;
}

.collapsible-section-header, .collapsible-section-header table tr td, .collapsible-section-header a {
	background: #80abd7;
	color: #FFFFFF;
	font-weight: bold;
}
.collapsible-section-header table tr td {
	padding-left: 0px;
	padding-right: 0px;
}

.nested-table-heading {
	width: 100%;
}
.nested-table-heading td, .nested-table-heading th {
	font-size: 100%;
}

.alignment-text {
	font-size: 11px
}
.regions-box
{
    width: 125px;
    color: #000000;
    background-color: #FFFFFF;
}

.regions-expandingbox
{

}

html>body .regions-expandingbox
{
    width: auto;
    min-width: 125px;
} 

table.borderAboveRow
{
    padding-left: 0px;
    padding-right: 0px;
    border-spacing: 0px 10px;
}

td.borderAboveRow
{
    border-top: 1px solid #80ABD7;
    padding-top: 10px;
}

td.frameSelector
{
	width: 125px;
}

#bare th {
    border: none;
} 
#bare td {
    line-height: 1.0em;
}

#ortholog-search table {
	border: none;
}
#ortholog-search tr {
	border: none;
}
#ortholog-search th {
	border: none;
}
#ortholog-search td {
	border: none;
	padding: 3px;
}

table.regions-table {
		font-family: Verdana, Arial, Helvetica, sans-serif;
	/* more specific to override imported rule */
    font-size:    medium;			/* false value for WinIE4/5 */
    voice-family: "\"}\"";			/* trick WinIE4/5 into thinking rule is over */
    voice-family: inherit;			/* recover from trick */
    font-size:    small;			/* intended value for better browsers */
	}
	html>body, html>h3 {
    font-size:    small; 			/* be nice to Opera */
}



/* these styles were added for dot plot only. please mimick for other analyses: */
#dotplot-container {
	padding-top: 20px;
}

#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control-panel_h {
	font-family: Verdana, Arial, Helvetica, sans-serif;
	font-size: 11px;
	font-weight: bold;
	color: #FFFFFF;
}
#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control #yui-gen0 td {
	font-size: 80%;
	line-height: 1.1em;
}
#mainwrapper #contentwrapper #content #dotplot-container #dotplot-control-panel_c #dotplot-control-panel #dotplot-control-panel_h td {
	font-family: Verdana, Arial, Helvetica, sans-serif;
	font-size: 11px;
	font-weight: bold;
	color: #FFFFFF;
}

#chromomap-control-panel_h {
	background-color: #80abd7;
}
#controlbox  {
	margin: 0px;
	padding: 5px;

}
#controlbox td {
	margin: 0px;
	padding: 0px;

}

#names.alignment-text  {
    float: left;
    vertical-align: top;
    padding-right: 20px;
    padding-left: 5px;
    width: 100px;
    position: inherit;
}

#sequences.alignment-text  {
    vertical-align:top;
    position: absolute;
    top: 10px;
    left: 125px;
    margin: 0;
    padding: 0;
    width: 575px;
    white-space: nowrap;
}

#alignment-tabs pre {
  line-height: 1.5em;
  width: 100%;
  overflow: auto;
  border: none;
  padding: 10px 0px 0px 0px;
  margin: 0;
  vertical-align: top;
  position: relative;
}

.inputtable, .outputtable {
    width: 700px;
    border: solid 1px rgb(200,200,200);
}

.inputtablelabel {
    font-weight: bold;
}

.inputtablenarrow {
    border: solid 1px #bbb;
    margin-right: 5px;
}

#sidebarsearch {
        margin: 0px;
        padding-bottom: 20px;
        padding-top: 0px;
        padding-right: 0px;
        padding-left: 0px;
}

#headersearch {
        margin: 0px;
        padding-bottom: 20px;
        padding-top: 0px;
        padding-right: 0px;
        padding-left: 0px;
}

#bodycontent ul li {
	list-style: none;
	background: url(../../images/bullet.gif) no-repeat 5px 0.5em;
	padding-left: 20px;
	/*margin: 0;*/
}


#bodycontent li {
	padding-bottom: 0.3em;
}

/*FGI for genomes table */
#genomes table{
	border-bottom-color: #80ABD7;
	border-bottom-style: solid;
	border-bottom-width: 1px;
	margin-left: 5px;
	}

#genomes td{
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	padding: 2px 5px;
}
#genomes th {
	border-top-color: #80ABD7;
	border-top-style: solid;
	border-top-width: 1px;
	border-right-color: #FFFFFF;
	border-right-style: solid;
	border-right-width: 0px;
	font-weight: bold;
	background-color: #80ABD7;
	text-align: left;
	color: #FFFFFF;
	padding-right: 5px;
	vertical-align: bottom;
	padding-left: 5px;
}

/* Used by download page to give lines around download categories */
#wrapper table.offset-table {
	margin-top: 20px;
	margin-bottom: 20px;
}

/* highlight row the mouse is over */
table.offset-table tr:hover > td {
	background-color:#E6EDF5;
}
	
th.offset-table-header {
border-left:1px solid #80ABD7;
border-top:1px solid #80ABD7;
font-weight:normal;
text-align:left;
vertical-align:bottom;
}
td.offset-table-content {
border-left:1px solid #80ABD7;
}
th.offset-table-spacer {
border-left:1px solid #80ABD7;
}
tr:first-child th.offset-table-spacer {
border-left:0px solid #80ABD7;
}
table.offset-table {
border-collapse:collapse;
border-spacing:0px;
}

/* Used by the chromomap and dotplot (esp for minimize dock) */

#titleBarBlock {
	position:absolute;
	left:600px;
	top:150px;
	width:340px;
	z-index:1;
	text-align: right;
}

/* styles used for transcript details */
.sequence-data {
	font-family: Courier, monospace;
}

.transcript-utr {
	background-color: #cf0;
}

.transcript-cds {
	background-color: white;
}

.transcript-shaded1 {
    background: #ccccff;
} 

.transcript-shaded2 {
    background: #ffff99;
} 

.transcript-start {
    background: #00ff00;
} 

.transcript-stop {
    background: #ff0000;
} 
 
.transcript-intron {
    background: #cccccc;
} 

/* Took this out because it has the potential to impact many pages.
   Change so that transcript details is using its own style for its table */
/*
#wrapper table.outputtable {
    background-color: #bbb;
	padding: 0px;
}

.outputtable TD {
    background-color: #fff;
}
*/