Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
S. hominis C80 23.86x 2.27 Mb 2.26 Mb 15 1.14 Mb 41 112.48 Kb 99.82
S. caprae C87 17.31x 2.47 Mb 2.46 Mb 14 884.88 Kb 46 121.59 Kb 99.69
S. epidermidis BVS058A4 N/A 2.61 Mb 2.58 Mb 17 842.14 Kb 50 132.56 Kb -
S. simulans ACS-120-V-Sch1 N/A 2.67 Mb 2.64 Mb 9 939.93 Kb 38 130.3 Kb -
S. lugdunensis ACS-027-V-Sch2 -- 2.61 Mb 2.59 Mb 4 1.76 Mb 17 434.57 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome