Saprolegnia genome
Gene Search
News
4/17/2012 The release of our Assembly of Saprolegnia declina
Strain Name Coverage Accession Submission Date S. declina VS20 171x AIJL01000000 4/17/2012 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.
2/11/2011 The release of RNA-Seq updated gene set for Saprolegnia parasitica
Strain Name Total Genes Accession Submission Date S. parasitica CBS 223.65 20,113 ADCG02000000 2/11/2011 This annotated release presents:
- A predicted protein gene set of 18,178 genes
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers
- tRNA predictions
- RFam features
A full summary can be found here.
2/11/2011 The release of our updated assembly of Saprolegnia parasitica
Strain Name Coverage Accession Submission Date S. parasitica CBS 223.65
(Mitochondrial sequence included)25X ADCG02000000 2/11/2011 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.
1/11/2011 Release of polymorphism data
We have identified SNPs in the reference genome S. parasitica CBS 223.65 and the highly-salmon-pathogenic isolate of S. parasitica (N12) and made SNP calls available for download.
5/7/2010 The release of our Annotation of Saprolegnia parasitica
Strain Name Total Genes Accession Submission Date S. parasitica CBS 223.65 18,762 ADCG01000000 5/7/2010 This annotated release presents:
- A predicted protein gene set of 18,178 genes
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers
- tRNA predictions
- RFam features
A full summary can be found here.
1/4/2010 The release of our Assembly of Saprolegnia parasitica
Strain Name Coverage Accession Submission Date S. parasitica CBS 223.65 Draft ADCG01000000 1/4/2010 This release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly.